PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim12g038440.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 82aa MW: 9474.53 Da PI: 5.6844

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim12g038440.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	30.9	7e-10	10	57	3	54
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 yk Vr ++ + + +eI p k+ +++lg+f taeeAa+ ++a+k ++ Sopim12g038440.0.1 10 YKSVRNRP-WETYGVEITNPI---KKVHVWLGNFKTAEEAARDFDEAAKMYH 57 89999666.999999988852...35***********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	15.923	9	66	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-13	9	72	IPR001471	AP2/ERF domain
CDD	cd00018	3.23E-19	10	68	No hit	No description
Pfam	PF00847	4.1E-5	10	57	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.1E-20	10	66	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-5	10	21	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-13	10	67	IPR016177	DNA-binding domain
PRINTS	PR00367	1.5E-5	32	48	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MAFPPNDVLY KSVRNRPWET YGVEITNPIK KVHVWLGNFK TAEEAARDFD EAAKMYHDPN 60 AKLNFPPTNE DRFQNSNNFE T*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:10792818, ECO:0000269\|PubMed:12654868, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:12090623, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975524	1e-135	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015163301.1	3e-37	PREDICTED: ethylene-responsive transcription factor 4-like
Swissprot	Q40477	1e-16	ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBL	A0A3Q7J7P4	2e-53	A0A3Q7J7P4_SOLLC; Uncharacterized protein
STRING	Solyc12g038440.1.1	3e-54	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17252	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72360.1	3e-12	ERF family protein

Publications ? help Back to Top
Ogata T, et al. Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants. Plant Biol (Stuttg), 2015. 17(5): p. 962-72 [PMID:25996234]