PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g019910.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 187aa    MW: 21078 Da    PI: 5.1791
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g019910.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-1020501748
                        HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +++G ++W+ I++ ++  Rt+k+c++rw ++l
  Sopim12g019910.0.1 20 EEHGAKNWSFISQLIP-SRTAKSCRERWCNHL 50
                        79**************.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.016154IPR017930Myb domain
SuperFamilySSF466893.67E-171981IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-171963IPR009057Homeodomain-like
CDDcd001676.74E-101950No hitNo description
PfamPF139214.4E-102064No hitNo description
PROSITE profilePS500904.8215187IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.8E-66485IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKDNLNILTS NFVHTIYSLE EHGAKNWSFI SQLIPSRTAK SCRERWCNHL NPQLDHRSFT  60
LEEEDIIFKA HAKFGNQWTM IESLLYPWLS LDPHIAPFSE IFPFSSVSPV FPGLSTTMSI  120
SLIGFQSSQN LNPINPIEQE DEVTLVLASE PNPSNFMPQT SITQSGNSCL TNMEKQLLSP  180
IILKVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-1719851985MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-1716851685C-Myb DNA-Binding Domain
1msf_C1e-1716851685C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-169HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010314116.15e-50uncharacterized protein LOC101245137
TrEMBLK4DDL41e-133K4DDL4_SOLLC; Uncharacterized protein
STRINGSolyc12g019910.1.11e-134(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3025422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.18e-26myb domain protein 70