PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g010490.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 365aa    MW: 41139.7 Da    PI: 7.7354
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g010490.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.11.4e-1046102155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +  Aa a++ a++k++g
  Sopim12g010490.0.1  46 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEGTAAHAYDLAALKYWG 102
                         57*******************99998898888888*****66*************98 PP
2AP251.23.1e-16145196155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Sopim12g010490.0.1 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 196
                         89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-1446112IPR016177DNA-binding domain
PfamPF008479.2E-746102IPR001471AP2/ERF domain
CDDcd000181.23E-1546112No hitNo description
Gene3DG3DSA:3.30.730.107.3E-1247111IPR001471AP2/ERF domain
PROSITE profilePS5103217.58347110IPR001471AP2/ERF domain
SMARTSM003809.4E-1947116IPR001471AP2/ERF domain
PRINTSPR003674.2E-64859IPR001471AP2/ERF domain
CDDcd000184.30E-24145206No hitNo description
PfamPF008475.8E-12145196IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17145206IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-17146205IPR001471AP2/ERF domain
PROSITE profilePS5103218.334146204IPR001471AP2/ERF domain
SMARTSM003801.2E-24146210IPR001471AP2/ERF domain
PRINTSPR003674.2E-6186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGKLSQQNQI RNNLSTNNGN NIIGSIVKVK RTRKTVPRDS PPQRSSIYRG VTRHRWTGRY  60
EAHLWDKNCW NESQNKKGRQ GAYDDEGTAA HAYDLAALKY WGSETILNFP VSTYEKEIIE  120
MENQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAATAYDMA AIEYRGLNAV TNFDLSRYIK WLKPNKNNQS NPNVETNMIP TPNHSIGSTT  240
IVTTTSSSTA LVYPDSQLTT NTSISDVSIS QINRPSSATS ALGLLLQSTK FKEMMEMTLA  300
AECPPAPIEL PDPDPPQSSN FPEDIKTYFD TQEFGNFGHE QGEDLVFNEI NSLMQPHLQF  360
DYDA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025884458.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-104AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A3Q7J3M70.0A0A3Q7J3M7_SOLLC; Uncharacterized protein
STRINGSolyc12g010490.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.13e-92ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]