PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim12g009490.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 25218.9 Da PI: 8.8778 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.3e-20 | 5 | 54 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 ++++GVr+++ +g+Wv+eIr+p +r++lg+f+taeeAa+a+++a+ + Sopim12g009490.0.1 5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFDTAEEAARAYDEAAILMS 54 59*******9.**********8.....334*********************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.03E-35 | 5 | 65 | No hit | No description |
Pfam | PF00847 | 9.8E-13 | 6 | 53 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-33 | 6 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 6 | 64 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.7E-39 | 6 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.023 | 6 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MVHSKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFDTAE EAARAYDEAA ILMSGRNAKT 60 NFPITQDLDN NNNNNNNNNN NNNNNKNVKG KDQESSSSSS FSSPKALSEI LHAKLRKCSK 120 VPSPSLTCLR LDIENSHIGV WQKRAGPSSD SKWVMTVELQ KKNNPKNINV HEGELNNNNN 180 NNNNDNNNNS KNSCGEITIR SEMDEEERIA LQMIEELVHD LT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-17 | 5 | 64 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 8e-17 | 6 | 63 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 1e-162 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251719.1 | 1e-157 | ethylene-responsive transcription factor WIN1-like isoform X1 | ||||
Swissprot | Q9XI33 | 1e-72 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | M0ZT30 | 1e-118 | M0ZT30_SOLTU; Uncharacterized protein | ||||
STRING | Solyc12g009490.1.1 | 1e-160 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1352 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 2e-56 | ERF family protein |