PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g005960.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 194aa    MW: 21271.8 Da    PI: 8.4887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g005960.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-192576156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++y+GVr ++ +gr+ AeIrdp++   ++r +lg+f+tae+Aa+a++ a+++++g+
  Sopim12g005960.0.1 25 PRYRGVRKRP-WGRFSAEIRDPVK---KARKWLGTFDTAEGAARAYDTAARSFHGA 76
                        68********.**********654...5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-112575IPR001471AP2/ERF domain
CDDcd000184.96E-302585No hitNo description
Gene3DG3DSA:3.30.730.101.6E-302683IPR001471AP2/ERF domain
PROSITE profilePS5103223.5382683IPR001471AP2/ERF domain
SMARTSM003806.0E-342689IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-212684IPR016177DNA-binding domain
PRINTSPR003675.9E-102738IPR001471AP2/ERF domain
PRINTSPR003675.9E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MPRRKNPEIN GSRSVVFQQS VIEPPRYRGV RKRPWGRFSA EIRDPVKKAR KWLGTFDTAE  60
GAARAYDTAA RSFHGAKAKT NFPVLPPYGE NQFENLQQSR PASSSMSSTV ESSSDARALC  120
KTMQPRIEIP RRIPMGEGHS DCDSSSSVVD GNCIGGGGGD DDQTSSFCKD PLPFDLNFPP  180
PSDDFQIITP LCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-192790670ATERF1
3gcc_A2e-192790670ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095850.0AC209585.1 Solanum lycopersicum DNA sequence from clone LE_HBa-26C13 on chromosome 12, complete sequence.
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019067242.11e-141ethylene-responsive transcription factor 7
TrEMBLA0A3Q7J1S81e-125A0A3Q7J1S8_SOLLC; Uncharacterized protein
STRINGSolyc12g005960.1.11e-141(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14369912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.14e-30ethylene responsive element binding factor 4