PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim12g005830.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 752aa MW: 82738.9 Da PI: 4.9578 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.1 | 2.3e-21 | 78 | 134 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r++ +++t++q++eLe++F+ +++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ Sopim12g005830.0.1 78 RKRYHRHTQHQIQELEAYFKDCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 134 789999************************************************995 PP | |||||||
2 | START | 182.2 | 3e-57 | 274 | 490 | 4 | 205 |
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 +a++e+v++a+ +ep+W+ s ++n+de+ + f+++ + + +ea r+s +v+m+ +lv++l++++ W + +a+ Sopim12g005830.0.1 274 MSAMDEFVQMAYIQEPLWSPSIenaaFMLNEDEYFRVFPRGIGprpigFVTEATRDSSIVIMNKLDLVQILMNVN-HWASIFSgivsRASC 363 579*******************999999************999********************************.*************** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165 ++vis+g g++q++ ae+q+ sp vp R+f+f+Ry++ +g+w+ivdvS+d+ + p R++++pSg+lie+ +ng skvt Sopim12g005830.0.1 364 VDVISTGgagnpnGVIQVILAETQVASPQVPtREFYFARYCKLRVDGTWAIVDVSLDQLRAGPA----LRSRKRPSGCLIEDAPNGCSKVT 450 ***************************************************************5....*********************** PP EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 wvehv+++++++h ++++lv+sgla+gak+w+a+l+rqc Sopim12g005830.0.1 451 WVEHVEVDASTVHTIYKPLVSSGLAFGAKRWLAALDRQCD 490 **************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-22 | 62 | 133 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.94E-20 | 65 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.459 | 75 | 135 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-21 | 76 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.72E-20 | 77 | 135 | No hit | No description |
Pfam | PF00046 | 6.9E-19 | 78 | 133 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 110 | 133 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 39.991 | 262 | 494 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.09E-27 | 264 | 493 | No hit | No description |
CDD | cd08875 | 3.96E-107 | 266 | 489 | No hit | No description |
SMART | SM00234 | 1.4E-55 | 271 | 491 | IPR002913 | START domain |
Pfam | PF01852 | 3.5E-49 | 274 | 490 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.4E-5 | 357 | 485 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.53E-16 | 510 | 743 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 752 aa Download sequence Send to blast |
MPAVHSRPAN LVPPLVENDG TNDTEIPLGQ PSNMMDNQPN SMENVTNTLD TSIGQDLGGG 60 DDDHNDDQEE GETATGKRKR YHRHTQHQIQ ELEAYFKDCP HPDDKQRKEL SRELGLEPLQ 120 VKFWFQNKRT QMKNQLERHE NTHLRIEIER MKSEMLRLKE ALGNLSCPTC GGHRINIGDL 180 SFEERQLRSE NARLKEEIER ISSMAGRVVG KSVFPNNNNG YISAPPVDFG VLPAYSMPQR 240 VDGNGGFEDV PIMSPMIIPP ISEIEKPFII ELVMSAMDEF VQMAYIQEPL WSPSIENAAF 300 MLNEDEYFRV FPRGIGPRPI GFVTEATRDS SIVIMNKLDL VQILMNVNHW ASIFSGIVSR 360 ASCVDVISTG GAGNPNGVIQ VILAETQVAS PQVPTREFYF ARYCKLRVDG TWAIVDVSLD 420 QLRAGPALRS RKRPSGCLIE DAPNGCSKVT WVEHVEVDAS TVHTIYKPLV SSGLAFGAKR 480 WLAALDRQCD RIASVLVTPT LNNDDMLLTT EESRKNVLKL AERMINCFSS GVSATVGNQW 540 TTVSAGNGTD ENVRIMTRKT VGDPSRPPGI VLSAATSFWL PIAPKTVFDY LRNENTRIEW 600 DILSNGSPLQ EIVQIANGTQ TGNCVSLLRM IGENDNQSNI VILQENSTDP TGSYVIYAPV 660 EICTMNTILN GGDPEHVSLL PSGFAILPDG PPGVRGTYNH GSGGSLLTVA FQILVEFVPV 720 ANISLGSVAT VNNLIACTIE RIKAALLPQP T* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004252035.1 | 0.0 | homeobox-leucine zipper protein HDG2-like | ||||
Swissprot | Q6ZAR0 | 0.0 | ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1 | ||||
TrEMBL | A0A3Q7J202 | 0.0 | A0A3Q7J202_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g005830.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Publications ? help Back to Top | |||
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