PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim11g072770.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 198aa MW: 22760.1 Da PI: 9.8426 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 5.1e-19 | 3 | 63 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t++ql +L++l++k r+p+ ++ ++++++l +++ ++V++WFqN++a++++ Sopim11g072770.0.1 3 RPRWSPTPQQLMILQDLYRKgLRNPTSSQVQKITTHLslygKIQCKNVFYWFQNHKARDRQ 63 89*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 107.7 | 7.2e-35 | 2 | 64 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+Ptp+Q++iL++ly++Glr+P+++++q+it++L+ yGki+ kNVfyWFQN+kaR+rqk Sopim11g072770.0.1 2 PRPRWSPTPQQLMILQDLYRKGLRNPTSSQVQKITTHLSLYGKIQCKNVFYWFQNHKARDRQK 64 579***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.2E-7 | 1 | 68 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.787 | 1 | 64 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.63E-6 | 2 | 64 | No hit | No description |
Pfam | PF00046 | 1.6E-16 | 3 | 63 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-8 | 3 | 63 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.89E-11 | 3 | 64 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MPRPRWSPTP QQLMILQDLY RKGLRNPTSS QVQKITTHLS LYGKIQCKNV FYWFQNHKAR 60 DRQKLRKELM MLHKIHKNTS DDDVPHQFHT TQNTNSNLEY NFPPSTFHTL YPQSPSILVH 120 QGEGKDTSSS STQMMNNMGN VDFPKHCVIE NGMMRTNVQG WILMMTDMGP ISIPSCSSNK 180 PLETLELFPI KATGIKE* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251451.1 | 1e-147 | WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A3Q7J0Z7 | 1e-146 | A0A3Q7J0Z7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g072770.1.1 | 1e-147 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28610.1 | 3e-31 | WOX family protein |