PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g072770.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WOX
Protein Properties Length: 198aa    MW: 22760.1 Da    PI: 9.8426
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g072770.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.1e-19363257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        r+R+++t++ql +L++l++k  r+p+ ++ ++++++l    +++ ++V++WFqN++a++++
  Sopim11g072770.0.1  3 RPRWSPTPQQLMILQDLYRKgLRNPTSSQVQKITTHLslygKIQCKNVFYWFQNHKARDRQ 63
                        89*****************99*************************************996 PP

2Wus_type_Homeobox107.77.2e-35264264
   Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                        +r+RW+Ptp+Q++iL++ly++Glr+P+++++q+it++L+ yGki+ kNVfyWFQN+kaR+rqk
  Sopim11g072770.0.1  2 PRPRWSPTPQQLMILQDLYRKGLRNPTSSQVQKITTHLSLYGKIQCKNVFYWFQNHKARDRQK 64
                        579***********************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.2E-7168IPR001356Homeobox domain
PROSITE profilePS5007110.787164IPR001356Homeobox domain
CDDcd000863.63E-6264No hitNo description
PfamPF000461.6E-16363IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.9E-8363IPR009057Homeodomain-like
SuperFamilySSF466893.89E-11364IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MPRPRWSPTP QQLMILQDLY RKGLRNPTSS QVQKITTHLS LYGKIQCKNV FYWFQNHKAR  60
DRQKLRKELM MLHKIHKNTS DDDVPHQFHT TQNTNSNLEY NFPPSTFHTL YPQSPSILVH  120
QGEGKDTSSS STQMMNNMGN VDFPKHCVIE NGMMRTNVQG WILMMTDMGP ISIPSCSSNK  180
PLETLELFPI KATGIKE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251451.11e-147WUSCHEL-related homeobox 3-like
TrEMBLA0A3Q7J0Z71e-146A0A3Q7J0Z7_SOLLC; Uncharacterized protein
STRINGSolyc11g072770.1.11e-147(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.13e-31WOX family protein