PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim11g072500.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 286aa MW: 32419.9 Da PI: 7.4733

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim11g072500.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	38	98	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprCds+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn+k s Sopim11g072500.0.1 38 EQQPQKCPRCDSANTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNRKLS 98 57899****************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	37	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.0E-33	40	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.031	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MCIMDHHQQE MTSQTLESML VCAKPDQDQK KPRPAAAEQQ PQKCPRCDSA NTKFCYYNNY 60 SLTQPRYFCK SCRRYWTKGG TLRNVPVGGG CRKNRKLSSA KRSSQDNISP NSSNSSTDLS 120 LAFARLQKQT NAIDQEQDTN NNMSMMYNTN NDNTSTTFLD ALRGGFLENH HGLFQHNMYN 180 YANMGQLVEN GEMGLSYDQD QMSIGTMMTT TMKQEMCNVA RSTEGHDLND NNKVLWGFPW 240 QQMSGDHHVN NNMNTNDFEY STNKQSWNGF GGSSNWHGLI NSPLM*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975523	0.0	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251272.1	0.0	dof zinc finger protein DOF5.3
TrEMBL	A0A3Q7J0U3	0.0	A0A3Q7J0U3_SOLLC; Uncharacterized protein
STRING	Solyc11g072500.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-45	TARGET OF MONOPTEROS 6