PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim11g072330.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARR-B | ||||||||
Protein Properties | Length: 331aa MW: 36482.8 Da PI: 9.2863 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 69.8 | 4.2e-22 | 150 | 203 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kp++ Wt LH++F+ea++ + G kA+Pk+i e+m+v+gLt+e+v SH QkYR Sopim11g072330.0.1 150 KPQIIWTDSLHHAFLEAIHDI-GFSKAVPKKIHEHMNVPGLTRENVSSHWQKYRN 203 68999****************.9*******************************6 PP | |||||||
2 | Response_reg | 37.7 | 1.1e-13 | 11 | 100 | 1 | 90 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 +l+vdD+ + +++++++l+k +y ++ +++ + +al +l k +Dli++D+ ++m+G +l + i+e+ ++p++ ++a ++e +l+ Sopim11g072330.0.1 11 ILVVDDNAAYLQVVAELLKKCNY-QAVAVKYPIDALPKLqiKVDSCDLIVIDVHKSDMNGCKLQEMIAEAF-EIPVLSMSADQKEGAILKG 99 89*********************.666677777888777346666**********************9999.9********9999888887 PP H CS Response_reg 90 l 90 l Sopim11g072330.0.1 100 L 100 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 2.5E-16 | 6 | 101 | No hit | No description |
SuperFamily | SSF52172 | 6.69E-15 | 7 | 101 | IPR011006 | CheY-like superfamily |
PROSITE profile | PS50110 | 19.159 | 10 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.9E-9 | 11 | 101 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.77E-8 | 12 | 101 | No hit | No description |
SuperFamily | SSF46689 | 1.65E-16 | 148 | 207 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-22 | 149 | 207 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-20 | 150 | 203 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.5E-7 | 155 | 202 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MSSKTAQKIS ILVVDDNAAY LQVVAELLKK CNYQAVAVKY PIDALPKLQI KVDSCDLIVI 60 DVHKSDMNGC KLQEMIAEAF EIPVLSMSAD QKEGAILKGL KGLSVDDQRD KGLCTVLQEK 120 KGKRAVPGKS AMKQRKRGKD NSGDLVLPTK PQIIWTDSLH HAFLEAIHDI GFSKAVPKKI 180 HEHMNVPGLT RENVSSHWQK YRNYLHRVID SSSINKVPDK NLASRANQST IASGMLVKHR 240 QVHQENFGVQ SSVPSSLIHP STGYLTGNLQ HLKNKGKEVD VVLDPVRNFS VFHKVSAMQG 300 LQGIGDLSAS SMNQGNDQPH QDMETEDNLQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-14 | 150 | 208 | 5 | 63 | ARR10-B |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 1e-145 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251256.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
Refseq | XP_004251257.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
Refseq | XP_010313509.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
Refseq | XP_010313510.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
Refseq | XP_010313513.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
Refseq | XP_010313514.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
Refseq | XP_019066717.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
Refseq | XP_019066718.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
Refseq | XP_019066719.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
Refseq | XP_025883995.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
Refseq | XP_025883996.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
Refseq | XP_025883997.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
TrEMBL | A0A3Q7J109 | 0.0 | A0A3Q7J109_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g072330.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3290 | 20 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-32 | response regulator 2 |