PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g071500.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 620aa    MW: 65681.1 Da    PI: 6.0076
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g071500.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-081256447
                        S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47
                        WT+eEd+ + +a +++ g+   + +Ia+ ++ g++l +++++++ +
  Sopim11g071500.0.1 12 WTKEEDKAFENALALFSGDsdKFLKIAAAVP-GKSLQEIIDHYNVL 56
                        *******************************.***********976 PP
2Myb_DNA-binding40.27.7e-1398142347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+  ++++ +++G+g+W+ I+r +   Rt+ q+ s+ qky
  Sopim11g071500.0.1  98 PWTEEEHRSFLQGLAKHGKGDWRGISRNFVFSRTPTQVASHAQKY 142
                         8*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.375161IPR017884SANT domain
SMARTSM007174.2E-6859IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-91264IPR009057Homeodomain-like
CDDcd001675.80E-71257No hitNo description
PfamPF002491.7E-51256IPR001005SANT/Myb domain
PROSITE profilePS5129417.45591147IPR017930Myb domain
SuperFamilySSF466898.61E-1693147IPR009057Homeodomain-like
SMARTSM007171.0E-1195145IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.4E-1595145IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.8E-1195142IPR009057Homeodomain-like
CDDcd001671.46E-998142No hitNo description
PfamPF002492.2E-1198142IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MSLNRTCNSS FWTKEEDKAF ENALALFSGD SDKFLKIAAA VPGKSLQEII DHYNVLVEDV  60
NDIESGKVPL PKYERMRSSS SRRRRSSGAG VERRKGVPWT EEEHRSFLQG LAKHGKGDWR  120
GISRNFVFSR TPTQVASHAQ KYYSRLNGNN TNRRNSIHDV SSVGAANITE PSQQKSDELT  180
GPCGGQSQLP IADYVTEAFE AGMLSLPGPV TNCTTDAFEG PSAVNPEKFP LGAALGSDLN  240
SSFPRVDEFL QSVEDLIIVP AEGTSGVCCE VDSRTSPSLS MQPSVTGGTG MYTHPVSFPD  300
VHEFLQGVEN LITVPGEGAS GANRGIDTRI SPSLSLQPSV AGGTRMYPHP VNVPAEGTSG  360
VSHGVDTRTS PSISLQPSVV GGTRMYPHPV NVPAEGISGA SHGIGARTSP SLSLQPSVVG  420
GTRMYPHPVN VPAECISGAS HGVDTRTSPL LNLQPSVVGG SRMYTHPIIV PAEGTSGARR  480
GVDTRTSPSL GLQPSVGGGT GMYTHAVNNV RYDLEELMTK QLVGASQVGP TINTASLPSP  540
IADHIGVRGC TTSSSAARND FASTMEAPGE GFSVDSMQMP SIPDHIGGGT YPCWEPSSKE  600
DSIFDLEDLY TDHMFGFHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1312841188RADIALIS
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251428.10.0uncharacterized protein LOC101258332
TrEMBLA0A3Q7J0B40.0A0A3Q7J0B4_SOLLC; Uncharacterized protein
STRINGSolyc11g071500.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139501113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-52MYB family protein