PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g071300.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 992aa    MW: 109899 Da    PI: 4.6649
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g071300.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-183680348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         WT+eEde+l +av+q+ g++Wk+Ia+++   R++ qc +rwqk+l
  Sopim11g071300.0.1 36 HWTPEEDEILRQAVQQFKGKSWKKIAECFK-DRSDVQCLHRWQKVL 80
                        6****************************9.************986 PP
2Myb_DNA-binding54.82.2e-1786132148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W++eEd++l+ +v+ +G++ W+tIa+++  gR +kqc++rw+++l
  Sopim11g071300.0.1  86 KGSWSKEEDDKLIGLVNIHGPKKWSTIAQELA-GRIGKQCRERWHNHL 132
                         799*****************************.*************97 PP
3Myb_DNA-binding51.72.1e-16138180145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         + +WT+eE++ l++a++ +G++ W+  +++++ gRt++ +k++w+
  Sopim11g071300.0.1 138 KEAWTQEEELTLIRAHEAHGNK-WAELSKYLP-GRTDNAIKNHWH 180
                         579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.02E-152986IPR009057Homeodomain-like
PROSITE profilePS5129418.3652980IPR017930Myb domain
SMARTSM007171.2E-143382IPR001005SANT/Myb domain
PfamPF002492.2E-153680IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-193686IPR009057Homeodomain-like
CDDcd001678.07E-143780No hitNo description
PROSITE profilePS5129429.63381136IPR017930Myb domain
SuperFamilySSF466895.62E-3083179IPR009057Homeodomain-like
SMARTSM007173.7E-1685134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2587135IPR009057Homeodomain-like
CDDcd001671.76E-1488132No hitNo description
PfamPF139211.5E-1689147No hitNo description
Gene3DG3DSA:1.10.10.602.5E-21136186IPR009057Homeodomain-like
PROSITE profilePS5129421.038137187IPR017930Myb domain
SMARTSM007178.9E-16137185IPR001005SANT/Myb domain
CDDcd001676.57E-12140180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 992 aa     Download sequence    Send to blast
MESDETSNTP SDDISSLQSS RPLHGRTSGP KRRSSHWTPE EDEILRQAVQ QFKGKSWKKI  60
AECFKDRSDV QCLHRWQKVL DPELVKGSWS KEEDDKLIGL VNIHGPKKWS TIAQELAGRI  120
GKQCRERWHN HLNPAIKKEA WTQEEELTLI RAHEAHGNKW AELSKYLPGR TDNAIKNHWH  180
SSVKKKRDSY IASGLLAQLP TLSNVNHQNQ SIPSSSVMLH QTSEDESVHK EGAELEEVME  240
CSQGSTLAGC PQSTSDLGNT FVHKRENGGM SMEIVREKDT SSSAAPCPTY YTPAFEDVGC  300
SMQEVPSELV DSNSLEQHTF SHDWGNSTGN DWQFNMDDFT EFIQESSGHY MQCLNGNENH  360
DMVTNPLQNA MESGATSNAG NIVEGPYNLN EMFNLNELFD GSRIEYPEVG IPQCSLPETG  420
VNGSGEPADS LIYQSSNNQI PESGNMAPQN CNDFEASTYQ QFSVPSHFSS EDRSLVFGIA  480
SDQFNYPPLE NPVQESFSSR CDGFICPSEF GSPSNDNGID NAVLKDHPDY TKDSSRLEEQ  540
KDEGALCYDP PRFPSLDTPF LYCDLKQSGS DTQQEYSPLG IRQLMTTSTD CSTPLRLWDS  600
PLRADSPDAI LKSAAKTFTG TPSILKKRQR HLVTPLSEKR WEKKLESDLN KESFSNMVTE  660
FPRVDDMFDE SANEKASTED KENLHPSSED GRKETGDGVT GLSCIGNSER QLDGGGANYH  720
KEPHSEYAGT NDAMGKVKQP PGVLVELSTN DMLFSPDRFF TKHDRATSLS IKALGNQYAR  780
RLEAASSNQA TVSSSSIVCS PDVLGKSQSG AFIATSMQYT TSTALENTTE NSENVFGADT  840
SNIFGETPFK ISIESPSAWK SPWFTDPLLS SPRYEKELTY EEFAFLLSPG DRSYDAIGLM  900
KQLSEQTAPS IADARQILGS ETPETILLGR NSKEQKADEN RTLLASNAMS ERRTLDFSEC  960
GTPGKGNETT TKFGSNDNVS SPSSYLLKCC R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-63351867158MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-63351867158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019066639.10.0transcription factor MYB3R-1-like
TrEMBLA0A3Q7J1B30.0A0A3Q7J1B3_SOLLC; Uncharacterized protein
STRINGSolyc11g071300.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-166myb domain protein 3r-4