PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim11g068480.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YB | ||||||||
Protein Properties | Length: 176aa MW: 19895.3 Da PI: 4.6421 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 42.3 | 1.9e-13 | 26 | 121 | 7 | 97 |
NF-YB 7 flPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 lP + v r++k+ l +++ is +d+ e + fi ++++ a+d c++ kr+tin +d++ al ++ f + +eplk+ l+ +re Sopim11g068480.0.1 26 GLPKTIVRRLVKEKLSqlsTDTDISllRDSLLAFSESARIFIHYLSATANDICKESKRQTINVEDVFKALEEIEFPELIEPLKASLEGFRE 116 578888888888765411156666644677888899******************************************************* PP NF-YB 93 legek 97 ++++ Sopim11g068480.0.1 117 KNSKR 121 88765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.2E-31 | 17 | 162 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.32E-23 | 26 | 135 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.3E-8 | 27 | 95 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MAEIEKQNKE KEKVVAETTV QIDQEGLPKT IVRRLVKEKL SQLSTDTDIS LLRDSLLAFS 60 ESARIFIHYL SATANDICKE SKRQTINVED VFKALEEIEF PELIEPLKAS LEGFREKNSK 120 RKSTSSKSPE SNKKAKLKEP VENGKGKMKE QPSDNENEDA QAEEEVNEVE DRVDD* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217004 | 1e-118 | AC217004.1 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence. | |||
GenBank | HG975523 | 1e-118 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251060.1 | 1e-121 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A3Q7IZT6 | 1e-120 | A0A3Q7IZT6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g068480.1.1 | 1e-120 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10161 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 9e-30 | nuclear factor Y, subunit B11 |