PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim11g068370.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 373aa MW: 41735.2 Da PI: 8.3378

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim11g068370.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.2	2.4e-10	69	109	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 k rr+++NReAAr+sR+RKka++++Le+ + ++Le+e Sopim11g068370.0.1 69 AKTLRRLAQNREAARKSRLRKKAYVQQLETsrmRLAQLEQE 109 6889************************9833344444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.4E-8	66	142	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.255	68	112	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-7	69	109	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.21E-6	70	112	No hit	No description
CDD	cd14708	2.65E-21	70	122	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.8E-7	71	113	No hit	No description
PROSITE pattern	PS00036	0	73	88	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.9E-27	150	225	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MFPSWPTKVH DTLRGSSKSI GGEQSSDSDS ALNTTISSRG EANVELESPS KSNYEKKSAG 60 SNSDRVTDAK TLRRLAQNRE AARKSRLRKK AYVQQLETSR MRLAQLEQEL QRARSQGIFM 120 GGGSTGPNIS SGASMFDMDY SRWLDDDQRQ ICELRTALQA HLGDGELRII VDAYIAHYDH 180 IFLLKGVVAK SDLFHLLTGI WASPAERGFL WLGGFKPSDL IKMLITQLDP LTQQQIVGIY 240 SLQQSSQQAE EALSQGLEQL KQSLIETIAT CSVNDGMHHM AIALGKLANL ESFVHQADNL 300 RQQTIHQLHR ILTIRQSARC FMMIGEYYGR LRALSSLWAS RPRETMMADD NSCQTTSELQ 360 MIQASQHHFS MR*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MFPSWPTKVH DTLRGSSKSI GGEQSSDSDS ALNTTISSRG EANVELESPS KSNYEKKSAG  60
SNSDRVTDAK TLRRLAQNRE AARKSRLRKK AYVQQLETSR MRLAQLEQEL QRARSQGIFM  120
GGGSTGPNIS SGASMFDMDY SRWLDDDQRQ ICELRTALQA HLGDGELRII VDAYIAHYDH  180
IFLLKGVVAK SDLFHLLTGI WASPAERGFL WLGGFKPSDL IKMLITQLDP LTQQQIVGIY  240
SLQQSSQQAE EALSQGLEQL KQSLIETIAT CSVNDGMHHM AIALGKLANL ESFVHQADNL  300
RQQTIHQLHR ILTIRQSARC FMMIGEYYGR LRALSSLWAS RPRETMMADD NSCQTTSELQ  360
MIQASQHHFS MR*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975523	1e-150	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010313359.1	0.0	transcription factor TGA9-like isoform X3
Refseq	XP_010313362.1	0.0	transcription factor TGA9-like isoform X5
Refseq	XP_025884127.1	0.0	transcription factor TGA9-like isoform X5
Swissprot	Q93XM6	1e-173	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A3Q7IZ90	0.0	A0A3Q7IZ90_SOLLC; Uncharacterized protein
STRING	Solyc11g068370.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-164	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]