PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim11g066050.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Dof | ||||||||
Protein Properties | Length: 320aa MW: 34628.3 Da PI: 9.0701 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.1 | 4.6e-39 | 69 | 128 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+ lkcprCds+ntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++ Sopim11g066050.0.1 69 EAGLKCPRCDSSNTKFCYFNNYSLSQPRHFCKNCRRYWTRGGALRNVPVGGGCRRNKRNK 128 6779*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-32 | 52 | 119 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-32 | 71 | 126 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.851 | 72 | 126 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 74 | 110 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MAFSSFPIYL DHPNLHHLQQ QPDHHQQGNP GLDNPQLLPP PTQVGGGPGS IRPGSMVNRA 60 RIAKLPLPEA GLKCPRCDSS NTKFCYFNNY SLSQPRHFCK NCRRYWTRGG ALRNVPVGGG 120 CRRNKRNKSS SNNNSAKSGG GGGLMGNSNN ASTSGIPSIN CSMEMIGHHF SQSSTQFTSL 180 MGAFQNLNNY GGGLIQPPTH QLVGEMGFQI GSNNLLPSLV ASNNFEHPTN LYPNFQNEGT 240 TTTTTTTIEA SNGVTQQVKM EDNNRQGMNS STKQFLGTLE NNNQYWDVAN ANANANVNSW 300 IGFSSDLNNN SLSTTNHLL* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004250963.1 | 0.0 | dof zinc finger protein DOF5.1 | ||||
TrEMBL | K4D9L4 | 0.0 | K4D9L4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g066050.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 1e-41 | OBF-binding protein 3 |