PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g065700.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YA
Protein Properties Length: 301aa    MW: 33061.4 Da    PI: 7.2325
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g065700.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.71.1e-29168224158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQy+rIl+RRq+Rak+e ekk  +k+rkpylheSRh+hAlrR R+sgGrF
  Sopim11g065700.0.1 168 QEPVYVNAKQYRRILQRRQSRAKAELEKKQ-IKGRKPYLHESRHQHALRRVRASGGRF 224
                         69************************9999.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-31166227IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.175167227IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.4E-24169224IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-22170192IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-22201224IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MPSNSKSTNR EETNAYNVPR STVYPEPWWN GAVYTPVSPG LMRENASDSS SLEQSVDGQS  60
QSDGGINEED DDAPEKSQSV VPLHADGSYG KADQNFQPAA PAIPPRLDGS LAQPQQLELV  120
GHSIACAPNP YVDPYYGGMM TAFGQPLVPP HVLDMHYARM PLPQEMAQEP VYVNAKQYRR  180
ILQRRQSRAK AELEKKQIKG RKPYLHESRH QHALRRVRAS GGRFAKKTDA SKGTGSVSSS  240
GSEPLQFNAA DIQKRNENGR LAELQQSYSN GSSYGNQSSF QESKDEYQSA ESREGGFSVK  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-17168224258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141460.0BT014146.1 Lycopersicon esculentum clone 133265F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010313273.10.0nuclear transcription factor Y subunit A-1
RefseqXP_010313274.10.0nuclear transcription factor Y subunit A-1
RefseqXP_025883888.10.0nuclear transcription factor Y subunit A-1
TrEMBLA0A3Q7IYS80.0A0A3Q7IYS8_SOLLC; Uncharacterized protein
STRINGSolyc11g065700.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.43e-56nuclear factor Y, subunit A1