PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim11g065110.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 518aa MW: 58242.4 Da PI: 7.4566

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim11g065110.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.6	3.7e-17	22	76	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t+ q+e+Le+l+e+++yp+ e +++LA++ gLte+q++ WF+ rR k+k+ Sopim11g065110.0.1 22 KRIIKTRAQIEALEKLYEEHKYPTDELKADLAESSGLTEKQISGWFCHRRLKDKR 76 78999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-19	3	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.18E-15	15	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.872	17	77	IPR001356	Homeobox domain
SMART	SM00389	6.3E-17	19	81	IPR001356	Homeobox domain
Pfam	PF00046	9.6E-15	22	76	IPR001356	Homeobox domain
CDD	cd00086	6.72E-15	22	76	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MMEDLSEVHS KDDKGQTEKN PKRIIKTRAQ IEALEKLYEE HKYPTDELKA DLAESSGLTE 60 KQISGWFCHR RLKDKRLSNG EIYINGRQDR SSGVIQDHGS GFRQDSCGST KQADDKKFDH 120 REVESRRLTG AEFSTADVAY EGGTHFRGKS NCMDDDSSRS SSSLRNECFS QNAEPYDKAT 180 SRYISQTLAT DFKGVRPKNG PSGYLKVKGQ VENAAITAVK RQLGRHYRLD GPPLGIEFDP 240 LPPGAFESSA PNLVNDSYYS PEPVPACSPD MSNVYRRSNG FGPNFKSNSH DSDLDGLSFK 300 RKSNSTHPEY RFNPKPKLKS SEYNEYPEWN SSLDMFEGSA RKMTVDSRDS CKLMAKHGRG 360 EIRTSTGSGN DLRSPYVGKV DREQVKPRFS SRSEVSLTAL EKEHLDRKPS DFNGSGYPNF 420 RERELHKIVE KDHISGKRPV VDENSNLVRV KVQVPRHNEI TIVQRAPVEV PDHQAYLRRA 480 SMIGMPPQTN HQISTAAEKP PSFSEDEETE DTSSFEG*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MMEDLSEVHS KDDKGQTEKN PKRIIKTRAQ IEALEKLYEE HKYPTDELKA DLAESSGLTE  60
KQISGWFCHR RLKDKRLSNG EIYINGRQDR SSGVIQDHGS GFRQDSCGST KQADDKKFDH  120
REVESRRLTG AEFSTADVAY EGGTHFRGKS NCMDDDSSRS SSSLRNECFS QNAEPYDKAT  180
SRYISQTLAT DFKGVRPKNG PSGYLKVKGQ VENAAITAVK RQLGRHYRLD GPPLGIEFDP  240
LPPGAFESSA PNLVNDSYYS PEPVPACSPD MSNVYRRSNG FGPNFKSNSH DSDLDGLSFK  300
RKSNSTHPEY RFNPKPKLKS SEYNEYPEWN SSLDMFEGSA RKMTVDSRDS CKLMAKHGRG  360
EIRTSTGSGN DLRSPYVGKV DREQVKPRFS SRSEVSLTAL EKEHLDRKPS DFNGSGYPNF  420
RERELHKIVE KDHISGKRPV VDENSNLVRV KVQVPRHNEI TIVQRAPVEV PDHQAYLRRA  480
SMIGMPPQTN HQISTAAEKP PSFSEDEETE DTSSFEG*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975523	0.0	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004250908.1	0.0	uncharacterized protein LOC101265304
TrEMBL	A0A3Q7IYS0	0.0	A0A3Q7IYS0_SOLLC; Uncharacterized protein
STRING	Solyc11g065110.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	3e-68	HB-other family protein