PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim11g051000.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 193aa MW: 22518.6 Da PI: 10.0614

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim11g051000.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.5	6.1e-15	2	62	29	90
FAR1 29 tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 t+r+ +C+keg+ +k++ +++r+etrt+C a++ ++++++gk+ v+++e++HnH+l+ Sopim11g051000.0.1 2 TSRKITCYKEGYGGLDKRD-MLVKKPRKETRTSCLAHMIISRQSNGKFSVISFEEKHNHPLV 62 78999*********999.999***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-12	2	62	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MTSRKITCYK EGYGGLDKRD MLVKKPRKET RTSCLAHMII SRQSNGKFSV ISFEEKHNHP 60 LVHQSLGKAS LGFTKRDHKN YLRDKRKESL QYGVARSLVN YFEERYEANF LNAWEEILEK 120 CDLKDNSWLK NTFAIREKWS MSYGRNIFSA SMQSTQLSES FNGSLKGYLK SDLDIVQFFK 180 NFQRADDDKR AN*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC247075	1e-145	AC247075.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-22d4 map 11, complete sequence.
GenBank	AC247140	1e-145	AC247140.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-57f15 map 11, complete sequence.
GenBank	AC247141	1e-145	AC247141.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-10l5 map 11, complete sequence.
GenBank	HG975523	1e-145	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016481065.1	2e-46	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_018632604.1	2e-46	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_018632605.1	2e-46	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	K4D8R2	1e-141	K4D8R2_SOLLC; Uncharacterized protein
STRING	Solyc11g051000.1.1	1e-142	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-11	FAR1-related sequence 5