PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g045690.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 303aa    MW: 34736.5 Da    PI: 6.0732
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g045690.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.2e-174289354
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                        y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa  +++a+++++
  Sopim11g045690.0.1 42 YLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALSYDRAARSMR 89
                        88******.**********933...5***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.17E-2541102No hitNo description
PROSITE profilePS5103219.46741103IPR001471AP2/ERF domain
SMARTSM003804.1E-2641109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2442102IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-164289IPR016177DNA-binding domain
PRINTSPR003674.0E-84253IPR001471AP2/ERF domain
PfamPF008474.9E-114289IPR001471AP2/ERF domain
PRINTSPR003674.0E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDLIKSSTSS STSTSRKPRK NNGTSNQSVK QKTEEQQSNF RYLGVRRRPW GRYAAEIRDP  60
NTKERHWLGT FDTAEEAALS YDRAARSMRV NNKSNKPNRT NFVYSDMPHG YSVTCIISPD  120
DQYQHHHHHH HQQQQQQQQQ QQQQQQQQHL LVFDQTENAP APNADYGAHF SQFSLSNMNN  180
VGGDSCDGVE FVSQQYYNPN YDMHMEDCYR YNSKNKTTTE LPPLPEDITS SGNYYNLNSE  240
FPNSEMGYDS KNEMIIGTNN EYGASTMTTT TAGNFSYFGF DDCLQPLQDD PSNNNSLGYW  300
FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-174289351ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2470700.0AC247070.6 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-56c7 map 11, complete sequence.
GenBankAC2470720.0AC247072.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-53f5 map 11, complete sequence.
GenBankAC2471050.0AC247105.3 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-68l9 map 11, complete sequence.
GenBankAC2471140.0AC247114.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-10d16 map 11, complete sequence.
GenBankAC2471210.0AC247121.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-18j22 map 11, complete sequence.
GenBankAC2471310.0AC247131.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-49n18 map 11, complete sequence.
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010313171.10.0ethylene-responsive transcription factor LEP-like
TrEMBLA0A3Q7IWY70.0A0A3Q7IWY7_SOLLC; Uncharacterized protein
STRINGSolyc11g045690.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-38ERF family protein