PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim11g045680.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 292aa MW: 33182.9 Da PI: 5.7368 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 42 | 89 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 y GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++ Sopim11g045680.0.1 42 YLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMR 89 88******.**********933...5***********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.32E-26 | 41 | 102 | No hit | No description |
SMART | SM00380 | 4.5E-28 | 41 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.77 | 41 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-12 | 42 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-25 | 42 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-17 | 42 | 89 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-8 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MDLIKSSTSS STSKSTKPRK NNGTSNQSVK QKTEEQQSNF RYLGVRRRPW GRYAAEIRDP 60 NTKERHWLGT FDTAEEAALA YDRAARSMRV NNKSNKPTRT NFVYSDMPHG YSVTCIVSPD 120 DQYQHHHHHQ QQQLLIFGQT ENNPAPNVDY GAHFSHFSLS NMNNIGGDSY DDGEFALQHY 180 CNPNYDVHME DGYRYDSNTT STELPPLPED ITSSGYYYNL SSEFPYSEMG YNSKNEMIIG 240 TNNEYQYGAS TITTTSSTTT TAGSFNYFGF DDCLQPLQDE SNNNRLGYFF S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-17 | 42 | 89 | 3 | 51 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Cell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC247070 | 0.0 | AC247070.6 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-56c7 map 11, complete sequence. | |||
GenBank | AC247072 | 0.0 | AC247072.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-53f5 map 11, complete sequence. | |||
GenBank | AC247105 | 0.0 | AC247105.3 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-68l9 map 11, complete sequence. | |||
GenBank | AC247114 | 0.0 | AC247114.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-10d16 map 11, complete sequence. | |||
GenBank | AC247121 | 0.0 | AC247121.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-18j22 map 11, complete sequence. | |||
GenBank | AC247131 | 0.0 | AC247131.4 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-49n18 map 11, complete sequence. | |||
GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004250840.1 | 0.0 | ethylene-responsive transcription factor LEP-like | ||||
Swissprot | Q9M644 | 8e-41 | LEP_ARATH; Ethylene-responsive transcription factor LEP | ||||
TrEMBL | M0ZQ48 | 1e-162 | M0ZQ48_SOLTU; Uncharacterized protein | ||||
STRING | Solyc11g045680.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5383 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 5e-31 | ERF family protein |
Publications ? help Back to Top | |||
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