PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g042560.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 174aa    MW: 19894.4 Da    PI: 6.1587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g042560.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-171363256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         y+GVr +k +g+Wv+eIr+p   gk++r++lg++  ae+Aa+a++ a+  l+ge
  Sopim11g042560.0.1 13 VYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYQKAEMAAAAYDVAAFHLKGE 63
                        59****999.**********8...557***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-111363IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-291373IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-201372IPR016177DNA-binding domain
SMARTSM003803.8E-301378IPR001471AP2/ERF domain
PROSITE profilePS5103221.9441372IPR001471AP2/ERF domain
CDDcd000187.98E-191474No hitNo description
PRINTSPR003673.2E-91425IPR001471AP2/ERF domain
PRINTSPR003673.2E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MENDQESKNN MDVYRGVRKR KWGKWVSEIR EPGKKTRIWL GSYQKAEMAA AAYDVAAFHL  60
KGERPNLRLN FPELIHTFPK PSSSRPEDVQ MAAHEAAMRF KPSIDDHPEE CGVGQVRVGL  120
SPSQIQAINE SPLDSPKMWM ELAGALLPVR EYTCPTDYFE DETPHHHESI WDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-151477668ATERF1
3gcc_A4e-151477668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250806.11e-129ethylene-responsive transcription factor ERF022-like
SwissprotQ9LQ288e-47ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA0A3Q7IWN01e-128A0A3Q7IWN0_SOLLC; Uncharacterized protein
STRINGSolyc11g042560.1.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.13e-48ERF family protein