PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g020950.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 327aa    MW: 37188.9 Da    PI: 8.121
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g020950.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.94.5e-081862211550
                         HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  15 eAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                          +A rsR RK++ i+eLe+ v++L+ae ++L  ele
  Sopim11g020950.0.1 186 QSAHRSRVRKLQHIAELERTVQALQAEGSELSAELE 221
                         69******************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-5177236IPR004827Basic-leucine zipper domain
CDDcd147031.04E-13177228No hitNo description
Gene3DG3DSA:1.20.5.1704.1E-8186230No hitNo description
SuperFamilySSF579591.06E-6186230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDSTSPFLQS YVDSNMDGSN GKAKPTEGSS HHHRWNSESI LIEEQPSWLD DLLNEPPETT  60
TVVHKGHRRS ASDTFAYVGA AAERLDTWEE PKNKNVNVGA SWGSVNYVSY KDLSAVPYEP  120
KPNSSHEQKF NKAAQELNGA PSVSHEKHNL REINNSKNQE GSNERSNNAQ AKHSMSKADA  180
KRAKQQSAHR SRVRKLQHIA ELERTVQALQ AEGSELSAEL EFVDQQNIIL SMENRALRQR  240
LDSLSQEQLI KHLEQEMLER ELTRLQTMYQ MQRQQMQQQH QQPQQQNHSK HRRNKSRDLE  300
AQLANLSIKN NEANSSRAQV TGSVRM*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250425.10.0uncharacterized protein At4g06598-like
RefseqXP_019066409.10.0uncharacterized protein At4g06598-like
TrEMBLA0A3Q7JKV20.0A0A3Q7JKV2_SOLLC; Uncharacterized protein
STRINGSolyc11g020950.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114452023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.26e-55bZIP family protein