PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim11g017360.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 182aa MW: 20034.9 Da PI: 4.55

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim11g017360.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.2	3.3e-07	17	53	3	39
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 +WT++E+ ++++ + +g+W++I+r +Rt+kq Sopim11g017360.0.1 17 SWTEQEHRSFLQGLAINEKGDWRSISRDCVITRTAKQ 53 7**************************8876788886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-6	14	53	IPR009057	Homeodomain-like
Pfam	PF00249	5.5E-6	16	53	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.4E-5	17	53	IPR009057	Homeodomain-like
CDD	cd00167	2.09E-5	17	53	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MQNHDSKADV EWRKKASWTE QEHRSFLQGL AINEKGDWRS ISRDCVITRT AKQEDADATG 60 TSQVPHTKDM IGSAYGGSQA VPNTSSESML PRDRTNAEQM IEVVGEESTD HIAVVNVGSD 120 VNVDAESSLL PSKQSCTAEG VTELRDVEEE ERKGKEEYIE RCVHITPTSK IESAASRIEN 180 N*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975523	0.0	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006361808.1	2e-36	PREDICTED: transcription factor DIVARICATA-like
Refseq	XP_015170955.1	2e-36	PREDICTED: transcription factor DIVARICATA-like
TrEMBL	A0A3Q7ISW9	1e-96	A0A3Q7ISW9_SOLLC; Uncharacterized protein
STRING	Solyc11g017360.1.1	1e-131	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4454	13	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-13	MYB family protein