PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g017100.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 477aa    MW: 54677.7 Da    PI: 6.5117
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g017100.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2707.9e-83914721373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++ Ll  A+ +++++++la + L +l ++++  gd++qR+aayf+ +L arl+   s  y+ +   +t+    +ee+ a++ f++vsP++
  Sopim11g017100.0.1  91 LIHSLLISATSIDENSMNLAIENLHELYQNVTLFGDSIQRMAAYFADGLIARLLTRKSPFYDMIMKPPTQ----EEEFLAFTQFYKVSPFY 177
                         57899999***********************************************999999988766665....688889999******** PP

                GRAS  92 kfshltaNqaIleavege.....ervHiiDf.disqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.g 173
                         +f+h+t NqaIle +e+e       +H+iDf dis+G+QWp+L+q+L++ +   +  sl+iTg g+      +el+et+ rL +fA+ + +
  Sopim11g017100.0.1 178 QFAHFTSNQAILEVFEKEleynnGLLHVIDFfDISYGFQWPSLIQSLSENSttLNRISLKITGYGR----TIDELRETETRLVSFAKGFrN 264
                         *****************998887889****55****************999545566*********....99***************9758 PP

                GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.adhnsesFlerflealey 263
                         ++fef+ +    l+  +l++L  +++E+la+nl+++l +l      + s+++++Lk v +l P +v++veqe ++  +++F+ rf+++l+y
  Sopim11g017100.0.1 265 LSFEFQGV----LSGYKLSNLTKRKNETLAINLIFHLNSLS-----TYSKISKTLKEVHDLCPSIVTIVEQEgCKIPKTNFMPRFMDSLHY 346
                         *******8....89999******************999997.....3344568*******************7777*************** PP

                GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                         ++a+fdsl+  lp +s er ++E+  lg+ei+nv+   +++   + ++e++e+ + r+e+ GF  vpls k+ +qakll++  +    +++
  Sopim11g017100.0.1 347 FAAMFDSLDDCLPIDSIERLSIEKNHLGKEIKNVLNYDNSSsrYNDDNEQMETCKGRMESHGFIGVPLSCKNIMQAKLLMKIRSYSNSTIQ 437
                         ***********************************9887763135789*******************************987774446666 PP

                GRAS 353 ..............eesgslvlgWkdrpLvsvSaW 373
                                       e+  ++ l W+dr++v++SaW
  Sopim11g017100.0.1 438 idgginggfrvfeiEDPRAISLAWQDRSIVTASAW 472
                         446666665555655566777************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.26665439IPR005202Transcription factor GRAS
PfamPF035142.7E-8091472IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MGDIVDHEEE LLSLRLAIVN DSSCCDNHIN KKIIKKRKRR ELMMNFINTW DLNESNCEGK  60
ILSLLELREM MLKNDVKKKG HIINDGKGLH LIHSLLISAT SIDENSMNLA IENLHELYQN  120
VTLFGDSIQR MAAYFADGLI ARLLTRKSPF YDMIMKPPTQ EEEFLAFTQF YKVSPFYQFA  180
HFTSNQAILE VFEKELEYNN GLLHVIDFFD ISYGFQWPSL IQSLSENSTT LNRISLKITG  240
YGRTIDELRE TETRLVSFAK GFRNLSFEFQ GVLSGYKLSN LTKRKNETLA INLIFHLNSL  300
STYSKISKTL KEVHDLCPSI VTIVEQEGCK IPKTNFMPRF MDSLHYFAAM FDSLDDCLPI  360
DSIERLSIEK NHLGKEIKNV LNYDNSSSRY NDDNEQMETC KGRMESHGFI GVPLSCKNIM  420
QAKLLMKIRS YSNSTIQIDG GINGGFRVFE IEDPRAISLA WQDRSIVTAS AWHCVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-469947227378Protein SCARECROW
5b3h_A1e-469947226377Protein SCARECROW
5b3h_D1e-469947226377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13439KKRKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1717340.0AC171734.2 Solanum lycopersicum chromosome 11 clone C11HBa0064J13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250586.10.0scarecrow-like protein 23
TrEMBLA0A3Q7JK870.0A0A3Q7JK87_SOLLC; Uncharacterized protein
STRINGSolyc11g017100.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123541823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.15e-49SCARECROW-like 21