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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim11g013150.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
GRAS |
Protein Properties |
Length: 488aa MW: 54335.3 Da PI: 5.5679 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim11g013150.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 337.5 | 2.4e-103 | 104 | 481 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88
lv+lL+++Aea++ +++ la+ +L rl+elasp+g ++m+Rlaayft AL+a +a+ + ++ + ++p+ ++e+++ ++laa++l++++s
Sopim11g013150.0.1 104 LVHLLMAAAEALTGVNKSreLARVILVRLKELASPNGaTNMERLAAYFTDALQALMASGTLHTKHMFSPNYKDEHRQGDVLAAFQLLQDMS 194
68***********85554449****************99*******************999***********9999*************** PP
GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvp 175
P++kf+h+taNqaI e+v +++rvHiiD+di++G+QW++L+qaL sR++gpp +lRiT+++++ sg s +++etg+rL+ fA+++g p
Sopim11g013150.0.1 195 PFVKFGHFTANQAIFESVTHDRRVHIIDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRSGSGrrSFGTVQETGRRLTAFAASIGQP 285
************************************************776556*********888899999******************* PP
GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyy 264
f+f+ ++ e +++ + ++ +gEal++n++l+l ++ + ++ ++L+ k+l+P++v++ve+e+ ++e F+ rf+++l++y
Sopim11g013150.0.1 286 FSFHHCRLDSDEIFKPTNVKLVRGEALIINCMLHLPHFSYRASDS---VASFLSGSKTLNPRLVTLVEEELRPigDEEGFVGRFMDTLHHY 373
*****99999999************************98554444...459*******************987767889************ PP
GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee. 354
sal+dslea++p +s++r+ vEr++lg++i+ +a ++r e ++ +W e+l+ +GF + ++s + +qaklll ++ dgyr+ee
Sopim11g013150.0.1 374 SALYDSLEAGFPLQSRARALVERVFLGPRITGSLARIYRARGEGER--CSWGEWLSGVGFCESNISFANHCQAKLLLGLFN-DGYRMEEIg 461
****************************************877766..89*******************************.******975 PP
GRAS 355 sgslvlgWkdrpLvsvSaWr 374
+ lvlgWk+r+L+s+S W+
Sopim11g013150.0.1 462 TNKLVLGWKSRRLLSASIWT 481
8999***************6 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 488 aa
Download sequence Send
to blast |
MAMMVDETIT DFDCYGSLSI ATTTITTTTA TTSSSSWNDW SPVFDWDVFS GGDNFQDLIE 60 SMVQGSGNCF YKSEHQDCAE FMEEEEESGD SNNNQSEDIN GLKLVHLLMA AAEALTGVNK 120 SRELARVILV RLKELASPNG ATNMERLAAY FTDALQALMA SGTLHTKHMF SPNYKDEHRQ 180 GDVLAAFQLL QDMSPFVKFG HFTANQAIFE SVTHDRRVHI IDYDIMEGIQ WASLMQALVS 240 RKDGPPTPHL RITALSRSGS GRRSFGTVQE TGRRLTAFAA SIGQPFSFHH CRLDSDEIFK 300 PTNVKLVRGE ALIINCMLHL PHFSYRASDS VASFLSGSKT LNPRLVTLVE EELRPIGDEE 360 GFVGRFMDTL HHYSALYDSL EAGFPLQSRA RALVERVFLG PRITGSLARI YRARGEGERC 420 SWGEWLSGVG FCESNISFAN HCQAKLLLGL FNDGYRMEEI GTNKLVLGWK SRRLLSASIW 480 TTMDIDL*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |