PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim11g010710.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | AP2 | ||||||||
Protein Properties | Length: 544aa MW: 59744.6 Da PI: 6.5905 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.5 | 1.9e-14 | 257 | 316 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g Sopim11g010710.0.1 257 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 316 57*******************666664478446**********99*************98 PP | |||||||
2 | AP2 | 49.7 | 9.3e-16 | 359 | 410 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Sopim11g010710.0.1 359 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 410 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.3E-11 | 257 | 316 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-17 | 257 | 325 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.05E-22 | 257 | 326 | No hit | No description |
SMART | SM00380 | 3.3E-28 | 258 | 330 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-15 | 258 | 325 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 258 | 324 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 259 | 270 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-18 | 359 | 419 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.8E-10 | 359 | 410 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.01E-11 | 359 | 418 | No hit | No description |
PROSITE profile | PS51032 | 19.151 | 360 | 418 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-31 | 360 | 424 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-18 | 360 | 418 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 400 | 420 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010080 | Biological Process | regulation of floral meristem growth | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0035265 | Biological Process | organ growth | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MAPDNNNWLS FSLSSMEMLN STSSHHHQNN SNNNNSSLLH HHHQSNMKFD LASSSADSHQ 60 YYFADNFFPH GWSNPKPQVM YSEAEKEVIG LNINTDSSIF QNFVENAPPK LEDFFGGDSS 120 SLTQDSSSLT HIYENPNGSA VYDNNNYNEH QDFKNITGFQ AFSTNSGSEV DNSVGTEFGT 180 NESCNELSYS QCVAAAVAAA APPLLPTGGG GGALSLAVNA AAATTTNQCS ENEKAMVAVA 240 DSQSCKKISD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR QVYLGGYDKE 300 DKAARAYDLA ALKYWGPTAT TNFPVTNYTK ELEEMKHMTK QEFIASLRRK SSGFSRGASI 360 YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG VNAVTNFEMN 420 RYDVEAIMKS SLPVGGTAKR LKLSLESEQK SSSSNNNNQQ QQMTQCNSSN NINFGAMPPV 480 SAIPCGVPFD NTAPAFYHHN FFQYLHPGNA SVPDASNATT TMAAAMPLLP SAADLFIWPH 540 QSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00504 | DAP | Transfer from AT5G10510 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004250153.2 | 0.0 | AP2-like ethylene-responsive transcription factor AIL6 | ||||
Swissprot | Q52QU2 | 1e-162 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A3Q7IQW9 | 0.0 | A0A3Q7IQW9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g010710.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2580 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 1e-139 | AINTEGUMENTA-like 6 |
Publications ? help Back to Top | |||
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