PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g010340.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 299aa    MW: 34260.3 Da    PI: 6.737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g010340.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.4e-1499150155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  Sopim11g010340.0.1  99 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 150
                         79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.81598149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1798171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.58E-1398154No hitNo description
Gene3DG3DSA:4.10.280.101.8E-1399168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-1199150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-10104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MALETVVFQQ DPFNYSHKDC NFYNLETFHD YGNFGYEGYN WNSSIPQSYN DDDNNNNINN  60
NNSNSSPDKY FPVESTVVSG RRKRRRTKCA KNEEEIHNQR MTHIAVERNR RRQMNDYLAV  120
LRSLMPPSYA QRGDQASIVG GAINFVKELE QLLQFLEAHK QVITTNQQHI QYSSFSKFFT  180
FPQYSTGNNN HPLAATTSNE GSEERRSAVA DIEVTMVESH ANVKVLSRRR PKQLLKIVNW  240
LQAMCLTILH LSVTTADHMV LYTFSVKVEE NCELNTVSEI ASAVHEMVAM IKEEAMPC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18185RKRRR
28186RKRRRT
399110RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250124.10.0transcription factor bHLH96-like
SwissprotQ9C7T41e-80BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A3Q7IQW00.0A0A3Q7IQW0_SOLLC; Uncharacterized protein
STRINGSolyc11g010340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]