PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g005610.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 493aa    MW: 56150 Da    PI: 5.1999
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g005610.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS269.61e-821124773373
                GRAS   3 elLlecAeavssgdlelaqalLarlsel....aspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevs 88 
                         +lLl  Aea+++++l la+ ++ rl+++     + + +p++Rla yft+AL  + ++ s++el   l+     +++ +++++a+++++e+s
  Sopim11g005610.0.1 112 DLLLMGAEAIEARNLDLASIIVLRLNTIlpnqENRENSPVERLALYFTQALLCKTLNnSSHELL-NLNQY---QSEFTSSMTAFQMLQEIS 198
                         789999********************996543444456************98776661333333.23333...3458899999******** PP

                GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                         P++kf+h+taNqaIlea++g+++vHi+Dfdi +G+QWp+L+  L +R +   slRiT ++s +++++  +e+tg+rL++fA+++++pf f+
  Sopim11g005610.0.1 199 PYVKFAHFTANQAILEATKGSQQVHILDFDIIEGIQWPPLMVDLVERGNTNSSLRITSLVS-DHSNSCHVEKTGQRLQEFANSINLPFMFD 288
                         *************************************************************.667999*********************** PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysa 266
                          ++ ++le+l   +  v+ + +l+ n++++  +++++  sl +   ++ + +++lsPk+vv+ve+e    ++ +s +F+e f+eal++y++
  Sopim11g005610.0.1 289 QILLEDLEKL---QVVVEGHNNLIANVMIHQLHMPQRGSSLVK---TFFNGLRKLSPKLVVLVEEElfnlSKISSMPFVEFFCEALHHYTT 373
                         *966655555...777888**********99999988888888...********************8776666999*************** PP

                GRAS 267 lfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveees 355
                         ++ds+  +++     + +++E+e+l+ +i + + +  +++ er++    W++ l +  GF+++p+s++++ qak+l++ ++  gy v++e+
  Sopim11g005610.0.1 374 IYDSILGGFGGGYkLALRVIEKEFLRVRILDSLRQFPSDKLERER----WSKGLYSlKGFRQIPMSSSNVRQAKHLVSLFS-GGYWVQNEQ 459
                         *****6666665538999*********************777766....**9987658***********************.89******* PP

                GRAS 356 gslvlgWkdrpLvsvSaW 373
                           l l+Wk+rpL+s+S W
  Sopim11g005610.0.1 460 SKLALCWKSRPLTSASIW 477
                         ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.96484459IPR005202Transcription factor GRAS
PfamPF035143.4E-80112477IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MECENFQPNY INPYIEYSNL ETTFSWNNPS IINPQCSIQD FVTIVNDVDI LDYFPNDFDF  60
IDGDVDIPLQ NTQQKIIQGD TELSREGQKS RVCNPRLKFL QDHLMEETSV TDLLLMGAEA  120
IEARNLDLAS IIVLRLNTIL PNQENRENSP VERLALYFTQ ALLCKTLNNS SHELLNLNQY  180
QSEFTSSMTA FQMLQEISPY VKFAHFTANQ AILEATKGSQ QVHILDFDII EGIQWPPLMV  240
DLVERGNTNS SLRITSLVSD HSNSCHVEKT GQRLQEFANS INLPFMFDQI LLEDLEKLQV  300
VVEGHNNLIA NVMIHQLHMP QRGSSLVKTF FNGLRKLSPK LVVLVEEELF NLSKISSMPF  360
VEFFCEALHH YTTIYDSILG GFGGGYKLAL RVIEKEFLRV RILDSLRQFP SDKLERERWS  420
KGLYSLKGFR QIPMSSSNVR QAKHLVSLFS GGYWVQNEQS KLALCWKSRP LTSASIWVPI  480
SSTSSPSSSI SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-4111848126381Protein SCARECROW
5b3h_D6e-4111848126381Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250446.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A3Q7IPZ90.0A0A3Q7IPZ9_SOLLC; Uncharacterized protein
STRINGSolyc11g005610.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-38GRAS family protein