PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim10g086530.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRAS

Protein Properties

Length: 762aa MW: 86565.4 Da PI: 6.1661

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim10g086530.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	368.6	8.3e-113	387	759	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL++cA+av+++d + +++lL++++ ++sp gd +qRla++f+ +L+arla+++s++ykal ++ts ++ l+a++l+ +P+ Sopim10g086530.0.1 387 LRSLLINCAQAVAADDCRSVTELLKQVRLHSSPFGDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTS---AADFLKAYHLYLASCPFR 474 689***********************************************************999998...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k+s +t N++I + ++++rvHiiDf+i +G+QWp+L+q +a+R++gpp+lRiTg++ p++g +e++eetg+rL+++A++++vpfe+++ Sopim10g086530.0.1 475 KISGFTSNKTIIRKSKHATRVHIIDFGILYGFQWPTLIQRIAAREGGPPNLRITGIEFPQPGfrPAERIEETGRRLSDYAKSFNVPFEYQA 565 *********************************************************9************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +ak++e++++e+L+++++E l+Vn+ ++ ++l+de+v ++s r+ vL+l+++++P+++++ + ++++ F++rf e l ++salfd+l Sopim10g086530.0.1 566 -IAKKWETIRVEDLKLEKDEYLVVNCLYRFKNLHDETVLSDSSRTLVLNLIREINPDIFIHGIVNGAYSAPFFVTRFREVLFHFSALFDML 655 .7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka.akqaklllrkvksdgyrveeesgslvlg 361 ea++pre er +Ere++gre+ nv+aceg er+er et+++W+ r +a F++ p+++++ ++ a +r+ + + + +++++++++lg Sopim10g086530.0.1 656 EANVPREFPERLLIEREIFGREALNVIACEGWERVERPETYKQWQVRHLRARFTQTPFEQEEiMNMAVKKVRTSYHKDFIIDQDNKWMLLG 746 ******************************************************98761555566777777888********* PP GRAS 362 WkdrpLvsvSaWr 374 Wk+r+++++S+W+ Sopim10g086530.0.1 747 WKGRTIYALSCWT 759 **********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.365	361	738	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-110	387	759	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence Send to blast
MDPRFNRFPT TVNGFNLENQ SLLSFSDNWK NNEPIIGAIY PDQKIVNAPT FENSFIQQTV 60 PSLSNDPSTT SNIALTSEMG TEDEYNEDFD FSDTVLSYIN QMLMEEDMED KTHMLHESLE 120 LQAKERSFYE ALGKKYPPSP HQNLAITEQN GEIPEDYYSA SLYSSTSNVI DTSGYLIDPS 180 ISNDHNYSYE QGLFICNGPY SSISSSNSIN NLGDGFLDSP VSPLHIPDIY NDSHPIWKFR 240 KGVEEASKFL PTYSKLLDNV VINDLLPQAK RGESGCAAAQ VEKRDVGATS PTGPRGTKNP 300 HRDDRDSEEE EERRSKQAAV YAESTVRSDE FDVILLHSMG DGREALTAYR ESLKNARTKP 360 TVQSKGFAVG RGGRGKKQSG KKEVIDLRSL LINCAQAVAA DDCRSVTELL KQVRLHSSPF 420 GDGNQRLAHC FADGLEARLA GTGSQIYKAL VNKRTSAADF LKAYHLYLAS CPFRKISGFT 480 SNKTIIRKSK HATRVHIIDF GILYGFQWPT LIQRIAAREG GPPNLRITGI EFPQPGFRPA 540 ERIEETGRRL SDYAKSFNVP FEYQAIAKKW ETIRVEDLKL EKDEYLVVNC LYRFKNLHDE 600 TVLSDSSRTL VLNLIREINP DIFIHGIVNG AYSAPFFVTR FREVLFHFSA LFDMLEANVP 660 REFPERLLIE REIFGREALN VIACEGWERV ERPETYKQWQ VRHLRARFTQ TPFEQEEIMN 720 MAVKKVRTSY HKDFIIDQDN KWMLLGWKGR TIYALSCWTP I*

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence Send to blast

MDPRFNRFPT TVNGFNLENQ SLLSFSDNWK NNEPIIGAIY PDQKIVNAPT FENSFIQQTV  60
PSLSNDPSTT SNIALTSEMG TEDEYNEDFD FSDTVLSYIN QMLMEEDMED KTHMLHESLE  120
LQAKERSFYE ALGKKYPPSP HQNLAITEQN GEIPEDYYSA SLYSSTSNVI DTSGYLIDPS  180
ISNDHNYSYE QGLFICNGPY SSISSSNSIN NLGDGFLDSP VSPLHIPDIY NDSHPIWKFR  240
KGVEEASKFL PTYSKLLDNV VINDLLPQAK RGESGCAAAQ VEKRDVGATS PTGPRGTKNP  300
HRDDRDSEEE EERRSKQAAV YAESTVRSDE FDVILLHSMG DGREALTAYR ESLKNARTKP  360
TVQSKGFAVG RGGRGKKQSG KKEVIDLRSL LINCAQAVAA DDCRSVTELL KQVRLHSSPF  420
GDGNQRLAHC FADGLEARLA GTGSQIYKAL VNKRTSAADF LKAYHLYLAS CPFRKISGFT  480
SNKTIIRKSK HATRVHIIDF GILYGFQWPT LIQRIAAREG GPPNLRITGI EFPQPGFRPA  540
ERIEETGRRL SDYAKSFNVP FEYQAIAKKW ETIRVEDLKL EKDEYLVVNC LYRFKNLHDE  600
TVLSDSSRTL VLNLIREINP DIFIHGIVNG AYSAPFFVTR FREVLFHFSA LFDMLEANVP  660
REFPERLLIE REIFGREALN VIACEGWERV ERPETYKQWQ VRHLRARFTQ TPFEQEEIMN  720
MAVKKVRTSY HKDFIIDQDN KWMLLGWKGR TIYALSCWTP I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-47	376	760	7	379	Protein SCARECROW
5b3h_D	1e-47	376	760	7	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254781	0.0	AC254781.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-8a7 map 10, complete sequence.
GenBank	HG975522	0.0	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010312352.1	0.0	scarecrow-like protein 9
Refseq	XP_010312353.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A3Q7JH66	0.0	A0A3Q7JH66_SOLLC; Uncharacterized protein
STRING	Solyc10g086530.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein