PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim10g086440.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Dof | ||||||||
Protein Properties | Length: 363aa MW: 38946.2 Da PI: 9.5429 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.2 | 1.6e-37 | 84 | 143 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+++kcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+ss Sopim10g086440.0.1 84 EATQKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSS 143 56789****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101447 | 1.62E-5 | 45 | 55 | No hit | No description |
ProDom | PD007478 | 9.0E-32 | 67 | 136 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.1E-32 | 86 | 141 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.994 | 87 | 141 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 89 | 125 | IPR003851 | Zinc finger, Dof-type |
SuperFamily | SSF101447 | 1.62E-5 | 251 | 256 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MVFSSISAYL DPSNWQQQVG YSIPNPQLPS GLSQPTPPRP LASTPPPPPP PPPPPQPHHV 60 GGGGSIRPGS MADRARLANI PMSEATQKCP RCESTNTKFC YFNNYSLSQP RHFCKTCRRY 120 WTRGGALRSV PVGGGCRRNK RSSTSNSSTS AKSSNNNTKS QGSSQTTNSG STSNNNSSPS 180 SAASLLGLMN PPIHPLRFMS PLGPLTDQHF TPNEMNYTSI SSPSPAPIVM GTNENMNFQL 240 GMGSNLEQWR LHQQLVNQFP YNLYGGLDSS PASGSGSASA SGLYPFHQAH YDASGGGVIS 300 QIRPKVSNPM LTQLALMKME DDQDHVASMP RQFLGNENWT SNANWNELSA SFSSSSTSNN 360 VL* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233123 | 0.0 | AC233123.5 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-13b20 map 10, complete sequence. | |||
GenBank | AC240203 | 0.0 | AC240203.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-27f6 map 10, complete sequence. | |||
GenBank | AC254781 | 0.0 | AC254781.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-8a7 map 10, complete sequence. | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249836.1 | 0.0 | dof zinc finger protein DOF2.4-like | ||||
TrEMBL | A0A3Q7IND4 | 0.0 | A0A3Q7IND4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g086440.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1917 | 24 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 7e-43 | DNA binding with one finger 2.4 |