PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g086380.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 514aa    MW: 57771.8 Da    PI: 5.2415
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g086380.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.61.9e-1161375051374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                         lv++L++cAea+++++l+la++l++ ++ + +s+ g +m++ a+yf+ AL ++++r   + ++ +  s+ +    +++l+    f++ + +
  Sopim10g086380.0.1 137 LVNTLMACAEAIQDNNLSLADELISDIRRIsVSQMGGAMKKEATYFADALYHKIHR---TNSEDIDESSYP---KDQVLS--MSFYDSCLF 219
                         6899**************************788889********************...222222222222...233333..36******* PP

                GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                         lkf+h++aNq Ilea++ ++rvH+iDf+++qG QWpaLlqaL+ Rp+gpp lR+Tg+  +++    +++l+e+g+ La++Ae++gv+fef+
  Sopim10g086380.0.1 220 LKFAHFIANQSILEAFADSKRVHVIDFSLNQGSQWPALLQALTLRPGGPPALRLTGIRGHSQPedTTDALQEVGRELAQLAESTGVEFEFR 310
                         *********************************************************8755446899************************ PP

                GRAS 180 vlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +v+++l+dle  +L+++p   E++aVn+v++lhrl++ ++++e+    vL+l+k++ Pk+v+++e+e++hn++ F++r+ ea +yys++f
  Sopim10g086380.0.1 311 GFVVHTLADLEAPMLNIRPsnVESVAVNSVFKLHRLFSIPGAIEK----VLDLIKQIDPKIVTIAEREVNHNETVFMNRIKEAWYYYSTMF 397
                         ******************9999***************77777777....****************************************** PP

                GRAS 269 dsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                         d l +++  + s  +  + +e lgrei n+vaceg++r+ rhet+++Wr r+++aGF+ vpl+++++  a++ll+ +  ++ yrvee++g+
  Sopim10g086380.0.1 398 DLLeNSEWTKRSTIDLEIAAEHLGREIYNLVACEGTKRVVRHETFGQWRVRFNSAGFNLVPLGSNTYRHANMLLALYTnGKRYRVEEKDGC 488
                         ***777788888999999999*********************************************************8888********* PP

                GRAS 358 lvlgWkdrpLvsvSaWr 374
                         l+l W++rpL+++SaWr
  Sopim10g086380.0.1 489 LMLSWHSRPLITTSAWR 505
                         ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.871111484IPR005202Transcription factor GRAS
PfamPF035146.4E-114137505IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MSSLEISMDT IMEDEDSFVS NTEAIIYAAS DISGWTHSLI SDHNIPNSSS STSLDEHHHH  60
HQQISTAAGG GGNEDDSMIV SSCASSRWFN NNKQIDDQQE IRIFNVDLRA LCENRLKSCG  120
GSESRDCLVY EESSVRLVNT LMACAEAIQD NNLSLADELI SDIRRISVSQ MGGAMKKEAT  180
YFADALYHKI HRTNSEDIDE SSYPKDQVLS MSFYDSCLFL KFAHFIANQS ILEAFADSKR  240
VHVIDFSLNQ GSQWPALLQA LTLRPGGPPA LRLTGIRGHS QPEDTTDALQ EVGRELAQLA  300
ESTGVEFEFR GFVVHTLADL EAPMLNIRPS NVESVAVNSV FKLHRLFSIP GAIEKVLDLI  360
KQIDPKIVTI AEREVNHNET VFMNRIKEAW YYYSTMFDLL ENSEWTKRST IDLEIAAEHL  420
GREIYNLVAC EGTKRVVRHE TFGQWRVRFN SAGFNLVPLG SNTYRHANML LALYTNGKRY  480
RVEEKDGCLM LSWHSRPLIT TSAWRGYVAN SRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-5214450426378Protein SCARECROW
5b3h_A5e-5214450425377Protein SCARECROW
5b3h_D5e-5214450425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331230.0AC233123.5 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-13b20 map 10, complete sequence.
GenBankAC2402030.0AC240203.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-27f6 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249633.30.0DELLA protein GAI
SwissprotQ7Y1B61e-161GAI_SOLLC; DELLA protein GAI
TrEMBLA0A3Q7IN050.0A0A3Q7IN05_SOLLC; Uncharacterized protein
STRINGSolyc10g086380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128641119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-151GRAS family protein
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]