PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim10g086370.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRAS

Protein Properties

Length: 511aa MW: 56318.4 Da PI: 4.6981

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim10g086370.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	314.6	2.1e-96	138	505	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 lv+ +++cA+a +++ la++l+ ++ + +++ g +m+++a++f+ A ++++r l p++ + ++ + + Sopim10g086370.0.1 138 LVNIIVACAKADKKNYSCLADRLIRNIIRRfeVAQFGGAMKKVATHFADAFDNKIHR--------LIPQD-----IVGLSYNHTSVYGNCL 215 578899*****************99888789999*****************........22222.....2222223334689999 PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 +lkf+h+taNq Ilea+++ +rvH+iDf+ +qGlQW aLlqaLa Rp+gpp +R+ g++ + ++ ++ l+e+g +La+fAe++gv+fef Sopim10g086370.0.1 216 FLKFAHFTANQSILEAFANFNRVHVIDFSFNQGLQWQALLQALALRPGGPPAFRLSGISGQPKSddGSDPLQEVGFKLAQFAESIGVEFEF 306 ******************************************************8754445899******************* PP GRAS 179 nvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 ++a +l+dle ++L+++p +Ea+aVn+v++l+ l++ ++++e+ v++l+k+++Pkvv+++eqe++hn+ F r++ea +yys++ Sopim10g086370.0.1 307 CGFMAYALADLEASMLNIRPsnEEAVAVNSVFELQPLFSIPGAIEK----VMDLIKQIEPKVVTITEQEVNHNGRVFSSRIIEASRYYSTM 393 999**********999************77777777....************************************* PP GRAS 268 fdsl.eaklpreseerikvErellg...reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrvee 353 fd l + + + ++ ++++E+++l ei n+vaceg++r+ r+ tl++W+ r+ +aGF+ vpl+++++kq +ll+ ++ +gy+ve Sopim10g086370.0.1 394 FDFLeNLESISPNNLDTVMEKQCLDvmvSEIYNLVACEGTKRIVRRGTLGQWQVRIYSAGFNLVPLTSDTYKQGAMLLASFPnAEGYKVEV 484 *4444455668999999986433389*********************************************************** PP GRAS 354 esgslvlgWkdrpLvsvSaWr 374 ++gsl+l W++ pL++ S Wr Sopim10g086370.0.1 485 KDGSLMLSWNSLPLIANSTWR 505 ******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.361	112	484	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.2E-94	138	505	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MSSREISMDT IMEDEDSFVS NTNAIIYAAS DISGWTHSLF SDNNIPNSSS STSVDEHHQQ 60 ISTAAGDGGK EDDSMIVSSS ASSSWFNDNK QIDDHQEIRI FNVDFSSLCN NTCSGFESHG 120 GLLPDTGRTV NGDASVLLVN IIVACAKADK KNYSCLADRL IRNIIRRFEV AQFGGAMKKV 180 ATHFADAFDN KIHRLIPQDI VGLSYNHTSV YGNCLFLKFA HFTANQSILE AFANFNRVHV 240 IDFSFNQGLQ WQALLQALAL RPGGPPAFRL SGISGQPKSD DGSDPLQEVG FKLAQFAESI 300 GVEFEFCGFM AYALADLEAS MLNIRPSNEE AVAVNSVFEL QPLFSIPGAI EKVMDLIKQI 360 EPKVVTITEQ EVNHNGRVFS SRIIEASRYY STMFDFLENL ESISPNNLDT VMEKQCLDVM 420 VSEIYNLVAC EGTKRIVRRG TLGQWQVRIY SAGFNLVPLT SDTYKQGAML LASFPNAEGY 480 KVEVKDGSLM LSWNSLPLIA NSTWRLCSQV *

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MSSREISMDT IMEDEDSFVS NTNAIIYAAS DISGWTHSLF SDNNIPNSSS STSVDEHHQQ  60
ISTAAGDGGK EDDSMIVSSS ASSSWFNDNK QIDDHQEIRI FNVDFSSLCN NTCSGFESHG  120
GLLPDTGRTV NGDASVLLVN IIVACAKADK KNYSCLADRL IRNIIRRFEV AQFGGAMKKV  180
ATHFADAFDN KIHRLIPQDI VGLSYNHTSV YGNCLFLKFA HFTANQSILE AFANFNRVHV  240
IDFSFNQGLQ WQALLQALAL RPGGPPAFRL SGISGQPKSD DGSDPLQEVG FKLAQFAESI  300
GVEFEFCGFM AYALADLEAS MLNIRPSNEE AVAVNSVFEL QPLFSIPGAI EKVMDLIKQI  360
EPKVVTITEQ EVNHNGRVFS SRIIEASRYY STMFDFLENL ESISPNNLDT VMEKQCLDVM  420
VSEIYNLVAC EGTKRIVRRG TLGQWQVRIY SAGFNLVPLT SDTYKQGAML LASFPNAEGY  480
KVEVKDGSLM LSWNSLPLIA NSTWRLCSQV *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-49	145	504	26	378	Protein SCARECROW
5b3h_A	4e-49	145	504	25	377	Protein SCARECROW
5b3h_D	4e-49	145	504	25	377	Protein SCARECROW
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC233123	0.0	AC233123.5 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-13b20 map 10, complete sequence.
GenBank	AC240203	0.0	AC240203.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-27f6 map 10, complete sequence.
GenBank	HG975522	0.0	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249835.2	0.0	DELLA protein GAI-like
TrEMBL	A0A3Q7IN05	0.0	A0A3Q7IN05_SOLLC; Uncharacterized protein
STRING	Solyc10g086370.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12864	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	1e-105	GRAS family protein