PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim10g086270.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29751.8 Da PI: 6.9194 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.2e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ll ++++++G g W++++ + g++R++k+c++rw++yl Sopim10g086270.0.1 13 KGSWTEQEDLLLRKCINKYGEGKWHLVPIRAGLNRCRKSCRLRWLNYL 60 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.6 | 3.2e-14 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg + +E +l+++++k+lG++ W++Ia +++ gRt++++k++w++ Sopim10g086270.0.1 66 RGDFASDEIDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTN 110 6778899***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-22 | 8 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.197 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.1E-27 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-15 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.78E-10 | 15 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 63 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-13 | 65 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.99 | 65 | 115 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.0E-12 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.21E-9 | 72 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MNSTSMSSLG VRKGSWTEQE DLLLRKCINK YGEGKWHLVP IRAGLNRCRK SCRLRWLNYL 60 RPHIKRGDFA SDEIDLILRL HKLLGNRWSL IAGRLPGRTA NDVKNYWNTN LLRKVNITKI 120 VPREKFKSKR GEISTKIEII KPQARKFISN TEKNITNNIV IVDKEEECKE IISEKQTRDA 180 SIDNGDEWWA NLLENCNDDV VEEEEGGGGG VTDYGKTITS LLHEEITPPL NGGGNIMQQE 240 QSDGWDDFFV DIDIWDLLN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 13 | 116 | 7 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00213 | DAP | Transfer from AT1G66370 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249668.1 | 0.0 | transcription factor MYB113 | ||||
Swissprot | Q9FNV9 | 2e-63 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A3Q7INJ7 | 0.0 | A0A3Q7INJ7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g086270.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66370.1 | 3e-65 | myb domain protein 113 |
Publications ? help Back to Top | |||
---|---|---|---|
|