PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g086250.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 276aa    MW: 31822.1 Da    PI: 8.4151
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g086250.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ed ll d+++++G g W++++++ g++R++k+c++rw++yl
  Sopim10g086250.0.1 13 KGSWTEQEDSLLRDCIQKYGEGKWHLVPARAGLNRCRKSCRLRWLNYL 60
                        799*******************************************97 PP
2Myb_DNA-binding45.71.5e-1466110147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++
  Sopim10g086250.0.1  66 RGDFAPDEVDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTH 110
                         788999****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-22662IPR009057Homeodomain-like
PROSITE profilePS5129417.371860IPR017930Myb domain
SuperFamilySSF466892.07E-2810107IPR009057Homeodomain-like
SMARTSM007173.7E-151262IPR001005SANT/Myb domain
PfamPF002491.8E-161360IPR001005SANT/Myb domain
CDDcd001671.91E-101560No hitNo description
PROSITE profilePS5129424.34161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2263115IPR009057Homeodomain-like
SMARTSM007174.8E-1465113IPR001005SANT/Myb domain
PfamPF002492.9E-1366110IPR001005SANT/Myb domain
CDDcd001672.39E-971111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MNTPMCASLG VRKGSWTEQE DSLLRDCIQK YGEGKWHLVP ARAGLNRCRK SCRLRWLNYL  60
RPHIKRGDFA PDEVDLILRL HKLLGNRWSL IAGRLPGRTA NDVKNYWNTH FHKKLSIIAP  120
HLHPHSRPRS HPRLQIKHKS IAVTKNEIIR PQPRNFSNVK KNDSHWCNNK SMITNTLDKD  180
DKRCNEIVVN ICEKPIGENT SSIDDGVEWW TNLLENCIEI EEETANTNFG KTPTMLLHEE  240
ISPPLVNGED NSMQQGPTNN WDDFSTDIDL WNLLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-23131157108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6471170.0HQ647117.1 Solanum lycopersicum cultivar Zhongshu-6 MYB transcriptional factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001265992.10.0transcription factor MYB75
SwissprotQ9FNV91e-61MY113_ARATH; Transcription factor MYB113
TrEMBLK4D4570.0K4D457_SOLLC; MYB transcriptional factor
STRINGSolyc10g086250.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-62myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]