PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim10g083900.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 201aa MW: 23542.3 Da PI: 8.4669

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim10g083900.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49	1.4e-15	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEde+l v+ +G ++W++ a+t g++R++k+c++rw++yl Sopim10g083900.0.1 8 RGQWLEEEDERLSMMVAVFGERRWDALAKTSGLKRSGKSCRLRWLNYL 55 899*******************************************97 PP
2	Myb_DNA-binding	51	3.4e-16	64	106	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l++++ kq+G++ W++Ia+ ++ gRt++++k++w+++l Sopim10g083900.0.1 64 ITADEERLIIRLQKQFGNK-WSKIAKQLP-GRTDNEIKNYWRSHL 106 59***************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.826	3	55	IPR017930	Myb domain
SuperFamily	SSF46689	6.97E-27	6	102	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-11	7	57	IPR001005	SANT/Myb domain
Pfam	PF00249	6.2E-13	8	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-20	9	62	IPR009057	Homeodomain-like
CDD	cd00167	9.67E-8	11	55	No hit	No description
PROSITE profile	PS51294	25.894	56	110	IPR017930	Myb domain
SMART	SM00717	1.0E-15	60	108	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-24	63	109	IPR009057	Homeodomain-like
Pfam	PF00249	2.5E-14	64	106	IPR001005	SANT/Myb domain
CDD	cd00167	2.03E-11	65	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MQEEELRRGQ WLEEEDERLS MMVAVFGERR WDALAKTSGL KRSGKSCRLR WLNYLRPNLK 60 HGHITADEER LIIRLQKQFG NKWSKIAKQL PGRTDNEIKN YWRSHLRKKT LIYKQESSES 120 NTSNSEQRSS ILKRDTVLNS SSNSEDNFSE KGDCSSADSF AYSSNEVTLL DWIPSWSYEQ 180 TRMEHHMYFC STNLCSCYPP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-27	5	110	1	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	9e-27	5	110	55	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	9e-27	5	110	55	159	MYB PROTO-ONCOGENE PROTEIN
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269\|PubMed:9839469}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975522	1e-142	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249793.1	1e-148	transcription factor MYB27
Swissprot	Q9SCP1	4e-50	MYB27_ARATH; Transcription factor MYB27
TrEMBL	A0A3Q7IM36	1e-147	A0A3Q7IM36_SOLLC; Uncharacterized protein
STRING	Solyc10g083900.1.1	1e-147	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	6e-51	myb domain protein 27

Publications ? help Back to Top
Albert NW, et al. A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots. Plant Cell, 2014. 26(3): p. 962-80 [PMID:24642943]