PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g083560.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 198aa    MW: 21165.4 Da    PI: 4.7951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g083560.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-192071155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        + ykG+r++k++g+Wv+eIr+p     r   r++lg+f t+e+Aa a++ a+++l+g
  Sopim10g083560.0.1 20 PVYKGIRRRKSSGKWVSEIREP-----RspNRIWLGTFPTPEMAAIAYDVAALALKG 71
                        68*******************9.....4489***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-122071IPR001471AP2/ERF domain
SMARTSM003804.3E-312185IPR001471AP2/ERF domain
PROSITE profilePS5103222.3922179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-272181IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-192181IPR016177DNA-binding domain
CDDcd000181.90E-282281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSGANNGSGS GSGSESGRHP VYKGIRRRKS SGKWVSEIRE PRSPNRIWLG TFPTPEMAAI  60
AYDVAALALK GRDTELNFPN SAPSLPVPAT NSPRDIQTAA ACAAAAIGAA GDALIGGRSN  120
NSNSNSNSRT VSRDVEDNYL IPNNNEYNFM DEDLIFDMPN VIMNMAEGML LSPPRLNHLP  180
PDDDYIGGAD QNLWNYP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883650.11e-142ethylene-responsive transcription factor ERF024
SwissprotQ9SJR06e-59ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A3Q7JG661e-140A0A3Q7JG66_SOLLC; Uncharacterized protein
STRINGSolyc10g083560.1.11e-141(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.13e-47ERF family protein