PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g081320.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 320aa    MW: 36554.8 Da    PI: 6.3222
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g081320.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-1663108147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v q+G+ +W++Ia+++  gR++k+c++rw++ 
  Sopim10g081320.0.1  63 RGHWRPHEDAKLKELVGQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 108
                         899*****************************.***********996 PP

2Myb_DNA-binding58.21.9e-18115158146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r+++++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ 
  Sopim10g081320.0.1 115 RKAFSEEEEERLLSAHKMYGNK-WSMIARLFP-GRTDNAVKNHWHV 158
                         789*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5958109IPR017930Myb domain
SMARTSM007175.8E-1462111IPR001005SANT/Myb domain
SuperFamilySSF466893.22E-2863156IPR009057Homeodomain-like
PfamPF002494.9E-1563108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2664116IPR009057Homeodomain-like
CDDcd001672.66E-1266107No hitNo description
PROSITE profilePS5129426.315110164IPR017930Myb domain
SMARTSM007173.0E-15114162IPR001005SANT/Myb domain
PfamPF002494.3E-15115157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-21117163IPR009057Homeodomain-like
CDDcd001675.12E-7126157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MNSSVGSCYV QKMNFLVPCV EENPWRLHQM ENKFKDEEEG LVDLIGIKDT NHNINGGTKL  60
CARGHWRPHE DAKLKELVGQ YGPQNWNLIA EKLEGRSGKS CRLRWFNQLD PRINRKAFSE  120
EEEERLLSAH KMYGNKWSMI ARLFPGRTDN AVKNHWHVIM ARKHREQNSV YRRRKTSNLQ  180
QIIAPNNNNN NDDDNDDMII QSDSTISSNI VDDLQSDSTC TNLSLTPSSS KAIIHPFLMT  240
RFNHHHVEHQ GIIDPNKGLS RDEEEVKMGL YGNMSDTNSE ISASESVANN MTNIVKIYEQ  300
DEDDIKTVNF IDFLGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32621636107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001335087.10.0Myb-like DNA-binding family protein
TrEMBLK4D3190.0K4D319_SOLLC; Uncharacterized protein
STRINGSolyc10g081320.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.18e-73myb domain protein 105