PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim10g080540.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 355aa MW: 39809.1 Da PI: 8.7439 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.2e-18 | 194 | 248 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Sopim10g080540.0.1 194 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 248 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.7 | 4.9e-41 | 194 | 283 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr +l Sopim10g080540.0.1 194 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENKRLHKELQELR-AL 283 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.232 | 190 | 250 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.01E-18 | 191 | 259 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.9E-16 | 192 | 254 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-17 | 194 | 248 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.06E-15 | 194 | 251 | No hit | No description |
Pfam | PF00046 | 1.8E-15 | 194 | 248 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 225 | 248 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 6.1E-25 | 250 | 293 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 4.6E-10 | 250 | 284 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MELALSLGGD NTPKPILFLE KSSSSSSSLH ENKVNKDVGF CMVLGKSCNE VERKKRSKKH 60 QEIRSSSIDP SLQLDLIPFS HGVSYNTCSK LSFPWLSQNL ATHEPAGLTN GPALDMTNRM 120 QLVVAEEAEE GAALSSPNSE ISNFQMNFPI YRNGKLINTK RDQCERDRDN NRWGNGNNYS 180 CSRISDEELD ASARKKLRLT KEQSAFLEES FKEHNTLNPK QKLALAKQLN LRPRQVEVWF 240 QNRRARTKLK QTEVDCEYLK KCCETLTEEN KRLHKELQEL RALKSSQPFY MQLPATTLTM 300 CPSCERVATT TSVTTTTTTT TPATTTTTTV AASNAVALHN HKLISVMTKL ECTN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 242 | 250 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244286 | 0.0 | AC244286.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence. | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249289.1 | 0.0 | homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | P46665 | 1e-86 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A3Q7JFH0 | 0.0 | A0A3Q7JFH0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g080540.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 3e-68 | homeobox from Arabidopsis thaliana |