PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g079050.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 381aa    MW: 41705.5 Da    PI: 8.4718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g079050.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12313358655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk Lq
  Sopim10g079050.0.1 313 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKGLQ 358
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.894307357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15310371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-11311360No hitNo description
Gene3DG3DSA:4.10.280.106.0E-14312368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12313363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9313358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDSSEFEKNQ NNSGLLRFRS APSSFLENFI DGVGNNGNMG SENKGLSSKF NLDGLNNQLV  60
SQNSLDSKVF ANLSSNSQLP PQYPRQNSTV HMVGSMEGGG GYRVMGSVLG NSNNHHQGQN  120
KLASNLMRQN SSPAGLFSQL NSLNGYATLK GGAGGYRMAT GANGDPNPSS SRLKDHFGFS  180
SVTPSSLGML SRISEVDDES SIATDLDDDE KRGNGNSEPQ LYNMGFPFNS WSDHSQFQQT  240
LTGHKRELDS EGNKLFANAQ IEELGNRPPI LSHHLSLPKT PADIAAMEKL LHFQDTIPCK  300
IRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ TNTADMLDLA VEYIKGLQKQ  360
YKVLTDCRAN CKCSAMQKPD *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2442980.0AC244298.9 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-22l14 map 10, complete sequence.
GenBankAC2445880.0AC244588.6 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-44j8 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249190.10.0transcription factor bHLH130-like
TrEMBLA0A3Q7IJR50.0A0A3Q7IJR5_SOLLC; Uncharacterized protein
STRINGSolyc10g079050.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51942437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-91bHLH family protein