PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim10g076820.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 284aa MW: 32911.8 Da PI: 9.1436 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.1 | 2e-08 | 32 | 77 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT eE + + da +++ ++ +W +a++++ g+t ++++ ++ Sopim10g076820.0.1 32 NWTVEENKMFEDALALFDKEtpdRWYNVAAMIP-GKTVNDVIKQYRE 77 8*****************99*************.********99986 PP | |||||||
2 | Myb_DNA-binding | 45.6 | 1.6e-14 | 152 | 196 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky Sopim10g076820.0.1 152 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 196 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.435 | 25 | 79 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-4 | 29 | 79 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-10 | 29 | 81 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.1E-12 | 31 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.0E-7 | 32 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.48E-7 | 32 | 79 | No hit | No description |
PROSITE profile | PS51294 | 18.924 | 145 | 201 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.73E-17 | 147 | 200 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-17 | 148 | 200 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.2E-12 | 149 | 199 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-12 | 150 | 196 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-12 | 152 | 196 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.05E-10 | 152 | 197 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MSREMGFLSP LPEETTYLRN SNWLFEENKG TNWTVEENKM FEDALALFDK ETPDRWYNVA 60 AMIPGKTVND VIKQYRELVD DVTDIEAGLI PVPASYMTTT SCTTRSFTLD WINHDQEIGA 120 FHDFNKRFHG PSHGKRNTSN RSSEYERKKG IPWTEEEHRQ FLLGLKKYGK GDWRNISRNF 180 VTTRTPTQVA SHAQKYFIRQ ISGGKDKRRS SIHDITTINL TEMKENHTSS NSPENSVPSP 240 QKQHNLSNQK SYIGFKTYGL KLHQHRMHSV ILQGLQFDQY NTM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-17 | 30 | 99 | 8 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240223 | 0.0 | AC240223.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-56g22 map 10, complete sequence. | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249083.1 | 0.0 | transcription factor DIVARICATA-like isoform X1 | ||||
Swissprot | Q8S9H7 | 4e-86 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A3Q7IK01 | 0.0 | A0A3Q7IK01_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g076820.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-101 | MYB family protein |
Publications ? help Back to Top | |||
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