PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g074680.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 827aa    MW: 90054.7 Da    PI: 6.4103
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g074680.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4132.7e-1264488072374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lLl+cAeavs+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alp+++ +   +++ ++a+++f+ +sP++k
  Sopim10g074680.0.1 448 LTLLLQCAEAVSADNLEEANKMLLEVSELSTPFGTSAQRVAAYFSEAMSARLLNSCLGIYAALPMTSVPMLYTQKMASAFQVFNGISPFIK 538
                         579*****************************************************************9888******************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         fsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s ++le+tg+rL++fAe+lg+pfef + va
  Sopim10g074680.0.1 539 FSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMDALEATGKRLSDFAERLGLPFEFLP-VA 624
                         *********************************************************....***************************.7* PP

                GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +++ +l++e+L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a 
  Sopim10g074680.0.1 625 DKVGNLDPEKLNVSKREAVAVHWLQ--HSLYDVTGSDPN----TLSLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGAC 708
                         ************************9..999999999999....**********************.899********************** PP

                GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                         +++eseer++vE++ll++ei+nv+a  g +r  + + +++Wre+l+++GF++++l  +aa+qa lll +++s+gy++ e++g+l lgWkd 
  Sopim10g074680.0.1 709 YGEESEERHVVEQQLLSKEIRNVLAVGGPSRSGDAK-FNNWREKLQQSGFRSLSLAGNAAAQATLLLGMFPSHGYTLVEDNGTLKLGWKDL 798
                         *****************************9777766.****************************************************** PP

                GRAS 366 pLvsvSaWr 374
                          L+++SaWr
  Sopim10g074680.0.1 799 CLFTASAWR 807
                         ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.82421787IPR005202Transcription factor GRAS
PfamPF035149.3E-124448807IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MAKALPVSGE NCTGVNVVGD SSGEKTSKQL FHCENGKMVR KRAASDMEIQ TGAGEEHRYL  60
RRPAMIGGSH SQVGDSRVCG NSNFGHGMNS NLTTTMTMTT QVSNYSTMQM LPSSTNLCGV  120
TSRGGPGIDT GFSNSTPNLT YTDAITSHHQ PQGTQTQNNN SQSPSVCVFS GLPLFPPDRN  180
RQNSGLLLQQ PPAAAAAVVS SPLTTGRIDS MEDSTSATAW IDSIIKDLIN SSAQVSVPQL  240
IQNVREIIHP CNPYLASLLE YRLRSLTSNN NGGADQNDPM ECWRRKESLP AQLAGLQQAQ  300
NNANLLQHNI LSLPDSSNNQ YLNWDIALPN SHNAPVAPSH NQHQQLGGNN PTATDLSFVT  360
LSPQVQQQQQ QQQQESPHSH SQQQAAVDLD QQQKQQQSSS SLSPTSVADN SAKTKTSTPA  420
PPVPINTYRE KKEEERQQKR DEEGLHLLTL LLQCAEAVSA DNLEEANKML LEVSELSTPF  480
GTSAQRVAAY FSEAMSARLL NSCLGIYAAL PMTSVPMLYT QKMASAFQVF NGISPFIKFS  540
HFTANQAIQE AFEREDRVHI IDLDIMQGLQ WPGLFHILAS RPGGPPYVRL TGLGTSMDAL  600
EATGKRLSDF AERLGLPFEF LPVADKVGNL DPEKLNVSKR EAVAVHWLQH SLYDVTGSDP  660
NTLSLLQRLA PKVVTVVEQD LSHAGSFLGR FVEAIHYYSA LFDSLGACYG EESEERHVVE  720
QQLLSKEIRN VLAVGGPSRS GDAKFNNWRE KLQQSGFRSL SLAGNAAAQA TLLLGMFPSH  780
GYTLVEDNGT LKLGWKDLCL FTASAWRPNS LHAAPGSRHF SRPNMD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04318103382Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2448830.0AC244883.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-25i14 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249012.10.0protein SCARECROW
RefseqXP_010327696.10.0protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A3Q7IJC30.0A0A3Q7IJC3_SOLLC; Uncharacterized protein
STRINGSolyc10g074680.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82582430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein