PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim10g044680.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 399aa MW: 44993.4 Da PI: 8.6212 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEde+l++ v+++G g+W+++++ + R++k+c++rw +yl Sopim10g044680.0.1 13 KGLWCPEEDEKLINHVTKYGHGCWSSVPKLAALQRCGKSCRLRWINYL 60 57799*****************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.5 | 3.5e-14 | 66 | 108 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg ++++E+ l+++++ +lG++ W+ Ia++++ gRt++++k+ w+ Sopim10g044680.0.1 66 RGTFSQQEENLIIQLHSLLGNK-WSQIASRLP-GRTDNEIKNLWN 108 899*******************.*********.*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-27 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.455 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-28 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-10 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-13 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.11E-9 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 24.053 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 64 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-13 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-13 | 66 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.00E-9 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MGRPCCYKKK LRKGLWCPEE DEKLINHVTK YGHGCWSSVP KLAALQRCGK SCRLRWINYL 60 RPDLKRGTFS QQEENLIIQL HSLLGNKWSQ IASRLPGRTD NEIKNLWNSS IKKKLRQKGI 120 DPNTHKLLSV IENEEKVSAI SMNIEKVSEG SSELNIIEDS NYRIKSKSSL VTMTMDNYPS 180 NTTTSAAPLT HKFFLERFVT THETSTASCN KPLDQLTSYL SFEKLNYGSN IGLSINSNTN 240 NLLLNSKNSE MFTHQVNSSI TNDNILTSPI AAIASNDSMR NGSSTSIELQ RNSSFFDSNA 300 FSWGTADYDK SEKEVNIHPS VPDPDDIKWS EYLHTQLLPG NAITNDQITQ DLYSAKSSIQ 360 FTTQGSLLQN QQQQPSLQTA NIYNKHYQRI SDSFGQFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-28 | 10 | 115 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00134 | DAP | Transfer from AT1G09540 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244571 | 0.0 | AC244571.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-36f8 map 10, complete sequence. | |||
GenBank | AC245571 | 0.0 | AC245571.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-19l5 map 10, complete sequence. | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004248973.1 | 0.0 | transcription factor MYB61-like | ||||
TrEMBL | A0A3Q7IE60 | 0.0 | A0A3Q7IE60_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g044680.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 1e-80 | myb domain protein 61 |