PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g009110.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 223aa    MW: 24239.4 Da    PI: 9.2881
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g009110.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.2e-212676256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a+++a+++++g+
  Sopim10g009110.0.1 26 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDNAAREFRGA 76
                        6********.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.9E-392689IPR001471AP2/ERF domain
PROSITE profilePS5103224.0522683IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-222683IPR016177DNA-binding domain
PfamPF008474.5E-142675IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-332684IPR001471AP2/ERF domain
CDDcd000188.05E-342683No hitNo description
PRINTSPR003671.4E-112738IPR001471AP2/ERF domain
PRINTSPR003671.4E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAPKEKIGAV TAMAMVNLNG ISKEVHYRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE  60
EAARAYDNAA REFRGAKAKT NFPKLEMEKE EDLKFAVKNE INRSPSQTST VESSSPVMVD  120
SSSPLDLSLC GSIGGFNHHT VKFPSSGGGF TGSVQAVNHM YYIEALARAG VIKLETNRKK  180
TVDYLGGGDS DSSTVIDFMR VDVKSTTAGL NLDLNFPPPE NM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-222283163ATERF1
3gcc_A5e-222283163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2547780.0AC254778.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-16p1 map 10, complete sequence.
GenBankBT0141260.0BT014126.1 Lycopersicon esculentum clone 133235F, mRNA sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233796.21e-165ethylene response factor 3
TrEMBLA0A3Q7ICU71e-164A0A3Q7ICU7_SOLLC; Uncharacterized protein
STRINGSolyc10g009110.1.11e-165(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-28erf domain protein 9