PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim10g007130.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HB-other | ||||||||
Protein Properties | Length: 595aa MW: 64528.8 Da PI: 4.5008 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17 | 1e-05 | 14 | 74 | 7 | 55 |
--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 f++ ++ e+e+ + p +e +LA+k ++ +qV +WFqNrR+ Sopim10g007130.0.1 14 FNPAEVAEMEAILQAhnITMPAREVLVDLAEKFssssersgkfVVQMKQVWNWFQNRRYAI 74 66666677777766432456777777888888888888888878999***********865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.04E-9 | 4 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0021 | 7 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.38E-4 | 13 | 75 | No hit | No description |
PROSITE profile | PS50071 | 8.778 | 13 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-6 | 13 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF16719 | 2.6E-41 | 161 | 288 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MGRPPSNGGP SFRFNPAEVA EMEAILQAHN ITMPAREVLV DLAEKFSSSS ERSGKFVVQM 60 KQVWNWFQNR RYAIRAKTAK SPGRYIAHPV PPSDPAAVKA PAKLSASPMP HSDPAAGRIM 120 PQAPQPIPAP QVRTMPQVPQ PLPAPSVAVQ SVGRSASDNT QMEFEAKSAR DGAWYDVASF 180 LSHRSVENGD PEVLVRFAGF GAEEDEWVNV RMHVRQRSLP CESSECVAVL PGDLILCFQE 240 GKEQALYYDA HVLDAQRRRH DVRGCRCRFL VRYDHDQSEE IVPLRKVCRR PETDYRLQQL 300 NAESVKQQKI GNDPTTGNTM KVYPPADTPQ KAQTESKMKL AEPTQKQPAP EYTIKPEPNV 360 FPMPQKPRTD SLTGNTLGET TPKLMEEMAE KPVAETAEAP QEEKIETPLA EITNKAPAEA 420 PEQPPAETTP KPLADSTSKP AEATEELPAE TTPNPLSVST SKQAEPTEET PAETTLKPPA 480 ASTLKPDEAP EQPPAETTPE PPASSTSNPV ETPKNPPAET TSVEETTLEP PAETTPEPPA 540 DATSKPAEQS EEPPAETTLE PPADSTSTPV EEASEEHVDA GPPAASTDQD SADV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 2e-48 | 159 | 292 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 2e-48 | 159 | 292 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 2e-48 | 159 | 292 | 1 | 134 | SHH1 SAWADEE |
4iur_B | 2e-48 | 159 | 292 | 1 | 134 | SHH1 SAWADEE |
4iut_A | 2e-48 | 159 | 292 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 2e-48 | 159 | 292 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 2e-48 | 159 | 292 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 2e-48 | 159 | 292 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 2e-48 | 159 | 292 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 2e-48 | 159 | 292 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254710 | 0.0 | AC254710.5 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-57k18 map 10, complete sequence. | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004248253.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 | ||||
Swissprot | Q8RWJ7 | 1e-138 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A3Q7J625 | 0.0 | A0A3Q7J625_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g007130.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8803 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-123 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |