PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g005240.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 346aa    MW: 39733.2 Da    PI: 6.5016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g005240.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+l + ++  G g+W++++r  g+ R++k+c++rw +yl
  Sopim10g005240.0.1 13 RGLWSPEEDEKLMRHITTQGHGCWSSVPRLAGLQRCGKSCRLRWINYL 60
                        788*******************************************97 PP
2Myb_DNA-binding49.97.5e-1666109146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E+  ++d ++ lG++ W+ Ia++++ gRt++++k++w++
  Sopim10g005240.0.1  66 RGSFSEQEERTIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                         899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-24463IPR009057Homeodomain-like
PROSITE profilePS5129415.645860IPR017930Myb domain
SuperFamilySSF466891.08E-2710107IPR009057Homeodomain-like
SMARTSM007171.4E-101262IPR001005SANT/Myb domain
PfamPF002494.3E-131360IPR001005SANT/Myb domain
CDDcd001679.88E-91660No hitNo description
PROSITE profilePS5129424.77561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2464116IPR009057Homeodomain-like
SMARTSM007177.6E-1565113IPR001005SANT/Myb domain
PfamPF002491.3E-1466109IPR001005SANT/Myb domain
CDDcd001671.17E-1068108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLMRHITT QGHGCWSSVP RLAGLQRCGK SCRLRWINYL  60
RPDLRRGSFS EQEERTIIDI HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHNLLKN KSNNSTKKSN NYTHHIQDST SIFTIDHTST NKGITSMDLK STFSPYCDNI  180
TYNHTPIVPN IEYQNPTFAW SEQINHNNTV ITTLQSQTSD QRTRDSLLDF TSCCLMENAA  240
NINVSSYINE NSMWNGTGLE PTTLNPINGQ EEQEMQVVQL QGDQEFPIIK TKFCDDQEDV  300
YKVVHDHDQT VEKTFNDSSN FDFEFMDSGL YTNVNSSMDQ LSWDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2448040.0AC244804.1 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-74b18 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248511.10.0transcription factor MYB86-like
TrEMBLA0A3Q7J5530.0A0A3Q7J553_SOLLC; Uncharacterized protein
STRINGSolyc10g005240.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.15e-79myb domain protein 67