PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g090790.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 252aa    MW: 29775.3 Da    PI: 9.6667
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g090790.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-181562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT +Ed ll+++vk++G g+W+++ar  g++R +k+c++rw +yl
  Sopim09g090790.0.1 15 KGPWTSDEDRLLIEYVKLHGEGRWNSVARLTGLRRNGKSCRLRWVNYL 62
                        79********************************************97 PP
2Myb_DNA-binding51.22.8e-1668112147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg  T+ E+ ++++++ ++G++ W+tIar ++ gRt++++k++w+++
  Sopim09g090790.0.1  68 RGQITPHEERIILELHSRWGNR-WSTIARSLP-GRTDNEIKNYWRTH 112
                         7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7891062IPR017930Myb domain
SuperFamilySSF466892.33E-3012109IPR009057Homeodomain-like
SMARTSM007179.3E-161464IPR001005SANT/Myb domain
PfamPF002491.2E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-231669IPR009057Homeodomain-like
CDDcd001677.48E-111762No hitNo description
PROSITE profilePS5129424.14963117IPR017930Myb domain
SMARTSM007171.1E-1467115IPR001005SANT/Myb domain
PfamPF002491.3E-1368112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2470116IPR009057Homeodomain-like
CDDcd001679.00E-1072113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGSNWGFIEE VGWRKGPWTS DEDRLLIEYV KLHGEGRWNS VARLTGLRRN GKSCRLRWVN  60
YLRPDLKRGQ ITPHEERIIL ELHSRWGNRW STIARSLPGR TDNEIKNYWR THFKKKTKNS  120
SDNSEKSRAR LWKKQQFQQQ QQQQQQINNQ IDIKNVMSLP TMPQGKQEMT ILYPNNMIDQ  180
QDQADFFYSS LNNSTSISQS EPSSSNEDIM WDDLWNLDDF YGHFMINTTT YNNKTNTIPC  240
LQQMATTPTF Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-281511727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247779.10.0myb-related protein 305
TrEMBLA0A3Q7I8X00.0A0A3Q7I8X0_SOLLC; Uncharacterized protein
STRINGSolyc09g090790.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.16e-74myb domain protein 305