PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim09g090260.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 257aa MW: 27881.3 Da PI: 9.3916

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim09g090260.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	20	42	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C F+++ ++++Hirt H Sopim09g090260.0.1 20 RCPLCYGAFRTHLQFMNHIRTtH 42 8********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	21	42	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSNANVPPPS FLSSCRVLLR CPLCYGAFRT HLQFMNHIRT THLLTSERNT ILCSHAYASN 60 ILSPENPLGS QLAAPQHTSS QNVIRHSSGY PSATLLRENM LSAQSTTPQR VSPQNVNLRP 120 PLYSSGSLLL SSVQHAAPQN VIQRCPLYGS GNFFTGNMSS PQPAAAQHHA TSRGNNNIVI 180 LSSNRNSPTR ISDRAPPINW QQMASRNRVG GPNSNDSAID CTRSLANRLN VPVPTNVDEL 240 ANIADEQNDV DLTLRL*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975521	0.0	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3Q7I8M3	0.0	A0A3Q7I8M3_SOLLC; Uncharacterized protein
STRING	Solyc09g090260.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15082	3	3