PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g089920.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 153aa    MW: 17170.2 Da    PI: 9.3701
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g089920.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.2e-211971256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +g+++AeIrdp++  g   r +lg+f+taeeAa+a+++a+ +l+g+
  Sopim09g089920.0.1 19 KYRGVRRRP-WGKFAAEIRDPTTrPG--SRQWLGTFDTAEEAARAYDKAAFNLRGH 71
                        8********.**********988544..999***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.2631978IPR001471AP2/ERF domain
PfamPF008475.3E-141971IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-301980IPR001471AP2/ERF domain
SMARTSM003804.9E-361984IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-221979IPR016177DNA-binding domain
CDDcd000183.78E-311979No hitNo description
PRINTSPR003673.5E-112031IPR001471AP2/ERF domain
PRINTSPR003673.5E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEGNSSRGKK AMQEKDEVKY RGVRRRPWGK FAAEIRDPTT RPGSRQWLGT FDTAEEAARA  60
YDKAAFNLRG HLATLNFPNE YYNQLSCPPL YYGNNNNNII CSSTNNVSRG KGISSSSSTN  120
YKGREIIELE CLDNSVLEEL LGVEDPKITK RK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-281913614114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247925.11e-110ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3Q7I8X11e-109A0A3Q7I8X1_SOLLC; Uncharacterized protein
STRINGSolyc09g089920.1.11e-110(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-32ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]