PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g089910.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 144aa    MW: 16158.8 Da    PI: 5.8331
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g089910.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.3e-202576256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +g+++AeIrd       + +r++lg+f taeeAa+a+++a+ +++g+
  Sopim09g089910.0.1 25 KYRGVRRRP-WGKFAAEIRD----SarQGARVWLGTFNTAEEAARAYDRAAYSMRGH 76
                        8********.**********....33334**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-232584IPR016177DNA-binding domain
SMARTSM003801.1E-332589IPR001471AP2/ERF domain
PROSITE profilePS5103223.7492583IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-312585IPR001471AP2/ERF domain
PfamPF008471.9E-152576IPR001471AP2/ERF domain
CDDcd000181.27E-182584No hitNo description
PRINTSPR003679.6E-122637IPR001471AP2/ERF domain
PRINTSPR003679.6E-124965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MELKLNMEQD PSNERRTNGG GGEIKYRGVR RRPWGKFAAE IRDSARQGAR VWLGTFNTAE  60
EAARAYDRAA YSMRGHLAIL NFPEEYNLPS SSSHFYSAGS YSSSSMASSS SSSSSRQVLE  120
FEYLDDKLLE ELLDCDEEPN KRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-402514314129Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247924.21e-101ethylene-responsive transcription factor ERF096
SwissprotQ9LTC52e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3Q7J2W91e-100A0A3Q7J2W9_SOLLC; Uncharacterized protein
STRINGSolyc09g089910.1.11e-101(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-25ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]