PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim09g089910.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 144aa MW: 16158.8 Da PI: 5.8331 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.3e-20 | 25 | 76 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd + +r++lg+f taeeAa+a+++a+ +++g+ Sopim09g089910.0.1 25 KYRGVRRRP-WGKFAAEIRD----SarQGARVWLGTFNTAEEAARAYDRAAYSMRGH 76 8********.**********....33334**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.03E-23 | 25 | 84 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-33 | 25 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.749 | 25 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-31 | 25 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-15 | 25 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.27E-18 | 25 | 84 | No hit | No description |
PRINTS | PR00367 | 9.6E-12 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-12 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MELKLNMEQD PSNERRTNGG GGEIKYRGVR RRPWGKFAAE IRDSARQGAR VWLGTFNTAE 60 EAARAYDRAA YSMRGHLAIL NFPEEYNLPS SSSHFYSAGS YSSSSMASSS SSSSSRQVLE 120 FEYLDDKLLE ELLDCDEEPN KRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-40 | 25 | 143 | 14 | 129 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004247924.2 | 1e-101 | ethylene-responsive transcription factor ERF096 | ||||
Swissprot | Q9LTC5 | 2e-42 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A3Q7J2W9 | 1e-100 | A0A3Q7J2W9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g089910.1.1 | 1e-101 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23220.1 | 1e-25 | ERF family protein |
Publications ? help Back to Top | |||
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