PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g075420.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 261aa    MW: 29638.1 Da    PI: 4.7182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g075420.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-1961109355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Sopim09g075420.0.1  61 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 109
                         9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500088.0571139IPR001711Phospholipase C, phosphatidylinositol-specific, Y domain
PROSITE profilePS5103223.77560117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3260118IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2260118IPR016177DNA-binding domain
SMARTSM003804.4E-3960123IPR001471AP2/ERF domain
CDDcd000183.60E-3361118No hitNo description
PRINTSPR003676.1E-126172IPR001471AP2/ERF domain
PfamPF008474.8E-1261109IPR001471AP2/ERF domain
PRINTSPR003676.1E-128399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006629Biological Processlipid metabolic process
GO:0034059Biological Processresponse to anoxia
GO:0035556Biological Processintracellular signal transduction
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004435Molecular Functionphosphatidylinositol phospholipase C activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MCGGAILADI IPPRDRRLSS TDLWPTDFWP ISTQNVPLNP KRARPSTGGE QMKKRQRKNL  60
YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DREARKIRGK KAKVNFPNED  120
DDHYCYSHPE PPPLNIACDT TVTYNQESNN CYPFYSIENV EPVMEFASYN GIEDGGEEMV  180
KNLNNRVVEE EEKTEDEVQI LSDELMAYES LMKFYEIPYV DGQSVAATVN PAAETAVGGG  240
SMELWSFDDV SRLQPSYNVV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2261117360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-21611191574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4967040.0AY496704.1 Lycopersicon esculentum ethylene-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234308.20.0ethylene response factor 2
TrEMBLQ6RJ360.0Q6RJ36_SOLLC; Ethylene responsive factor 2
STRINGSolyc09g075420.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-36ERF family protein