PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim09g066350.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 157aa MW: 17764.4 Da PI: 7.9597 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.2e-21 | 13 | 64 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdp+ ng +r +lg+f taeeAa+a+++a+ +l+g+ Sopim09g066350.0.1 13 KYRGIRRRP-WGKYAAEIRDPNRNG--ARLWLGTFETAEEAARAYDRAAFSLRGH 64 8********.**********96665..**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-32 | 13 | 72 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-14 | 13 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-24 | 13 | 72 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.053 | 13 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-35 | 13 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.79E-29 | 13 | 73 | No hit | No description |
PRINTS | PR00367 | 1.5E-11 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MENEDQRGRR ENKYRGIRRR PWGKYAAEIR DPNRNGARLW LGTFETAEEA ARAYDRAAFS 60 LRGHQAILNF PNDGHYHINN NTNVPLGVGP SYNTPSTMGN NMNMSSSSSA SASASAFSDD 120 RHDHGEKVEF EYLDNNLLDE LLASQVHRHD NKRPKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-29 | 5 | 73 | 2 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004247349.1 | 1e-113 | ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 3e-39 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A3Q7I4S1 | 1e-112 | A0A3Q7I4S1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g066350.1.1 | 1e-113 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 9e-27 | ERF family protein |
Publications ? help Back to Top | |||
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